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. 2013 Dec 10;14:869. doi: 10.1186/1471-2164-14-869

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Copyright © 2013 Gnanakkan et al.; licensee BioMed Central Ltd.

This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Cross platform TE-array validation. A) NanoString probes were designed for 30 candidate TE regions shown to be differentially expressed in at least one tissue by TE-Array. Discrete transcript counts were obtained for individual tissues and for the somatic pool. Log₂ ratios of transcript counts were compared to TE-array M values. B) RNAseq reads were aligned to the 30 candidate TE regions. Log₂ ratios of tissue read counts were generated in comparison to an in silico pool; these are plotted on the X-axis, and M values from TE-array are plotted on the Y-axis.