Table 1.
Statistical distribution of Pafig training dataset
| Residue position | 1 | 2 | 3 | 4 | 5 | 6 |
|---|---|---|---|---|---|---|
| K |
1.5 |
1.5 |
1.5 |
1.5 |
1.5 |
1.4 |
| R |
0.7 |
0.7 |
0.7 |
0.8 |
0.8 |
0.7 |
| D |
0.9 |
0.9 |
0.9 |
0.8 |
0.8 |
0.9 |
| E |
1.3 |
1.3 |
1.3 |
1.3 |
1.3 |
1.8 |
| N |
1.1 |
1.0 |
1.1 |
1.0 |
1.0 |
1.0 |
| Q |
0.9 |
0.9 |
1.0 |
1.0 |
0.9 |
0.9 |
| P |
0.7 |
0.7 |
0.6 |
0.7 |
0.6 |
0.6 |
| H |
1.0 |
1.1 |
1.1 |
1.0 |
1.1 |
1.0 |
| M |
0.8 |
0.7 |
0.7 |
0.7 |
0.8 |
0.7 |
| C |
0.5 |
0.6 |
0.6 |
0.6 |
0.6 |
0.5 |
| S |
1.3 |
0.8 |
0.8 |
0.8 |
0.9 |
0.9 |
| T |
1.1 |
1.7 |
1.0 |
1.0 |
1.0 |
1.0 |
| F |
1.2 |
1.2 |
1.2 |
1.2 |
1.2 |
1.1 |
| W |
0.9 |
1.0 |
0.9 |
0.9 |
0.9 |
0.8 |
| Y |
1.2 |
1.2 |
1.2 |
1.2 |
1.2 |
1.5 |
| V |
1.1 |
1.1 |
1.6 |
1.1 |
1.2 |
1.1 |
| L |
0.7 |
0.7 |
0.8 |
0.7 |
0.7 |
0.7 |
| I |
0.8 |
0.8 |
0.8 |
1.4 |
1.4 |
0.8 |
| G |
1.1 |
1.0 |
1.0 |
1.0 |
1.1 |
1.1 |
| A | 0.9 | 0.9 | 1.0 | 1.0 | 1.0 | 0.9 |
Statistical distribution of Pafig full training dataset, including all positive and negative hexapeptides, normalized versus frequencies of aminoacid occurrence in all proteins deposited in UniProt. The expected values for a well balanced training dataset should equal 1. The values above 1 denote over-representation of a residue at the specific location of training hexapeptides, values below 1 show under-representation. The bias from STVIIE is in bold.