Table 1.
Number of ERVs detected de novo by LTRHarvest and LTRDigest in each Bos species and their features
| B. taurus | B. indicus | B. grunniens | |
|---|---|---|---|
| Elements detected |
87340 |
55430 |
43624 |
| Elements with PPT |
22002 |
14153 |
10285 |
| Elements with PBS |
5154 |
3279 |
2963 |
| Elements with retroviral genes or regions of retroviral genes. |
1532 |
771 |
519 |
| - With gag |
675 |
316 |
199 |
| - With protease |
701 |
338 |
186 |
| - With pol |
1324 |
685 |
440 |
| - With RT |
834 |
417 |
240 |
| - With IN |
927 |
475 |
315 |
| - With RNaseH |
816 |
429 |
228 |
| - With env |
537 |
246 |
172 |
| - With other |
348 |
132 |
81 |
| LTR-gag-pol-env-LTR |
251 |
113 |
75 |
| LTR-gag-pol-LTR |
334 |
160 |
91 |
| LTR-gag-env-LTR |
13 |
8 |
9 |
| LTR-pol-env-LTR |
191 |
95 |
61 |
| LTR-gag-LTR |
77 |
35 |
24 |
| LTR-pol-LTR |
548 |
317 |
213 |
| LTR-env-LTR | 82 | 30 | 27 |
PPT, polypurine tract; PBS, protein binding site; RT, reverse transcriptase; IN, integrase.