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. 2013 Jun 24;1(3):e25502. doi: 10.4161/tisb.25502

graphic file with name tisb-1-e25502-g2.jpg

Figure 2. pfam00822 proteins from vertebrates and invertebrates are highly divergent. Bootstrap analysis of pfam00822 proteins using the MEGA (Molecular Evolutionary Genetic Analysis) software program available at http://www.megasoftware.net.108 The phylogenetic tree resulting from ClustalW2 analysis is shown. Several different subgroup clades are observed. Note that NSY-4 clusters with other putative gamma subunits and C. elegans claudins, while the vertebrate VGCC gamma subunits are loosely associated with fly claudins. Scale bar indicates amino acid substitutions per residue. Accession numbers for proteins included in the alignments are: NSY-4 (NP_500189.4), K10D6.2(NP_505843), R04F11.1 (NP_506087), C24H10.1(NP_508863), Y67A10A.9(NP_502746.1), mGamma5 (voltage-dependent calcium channel gamma subunit 5) (NP_542375), mGamma1 (NP_031608), mGamma6 (NP_573446.1), mGamma3 (NP_062303,)CLC-1(NP_509847), CLC-2(NP_509257), CLC-3 isoform a(NP_001024993), CLC-4 (NP_509800), CLC-5(NP_509258), VAB-9 (NP_495836), CG6982 (dVAB-9) (NP_001097876), mTMEM47(NP_620090), cTMEM47 (NP_001003045.1), hTm47 (NP_113630.1), xtmem47 (NP_001085134.1), mclaudin1 (NP_057883), mclaudin2 (NP_057884), mclaudin3 (NP_034032), mclaudin4 (NP_034033), mclaudin5 (NP_038833), mclaudin6 (NP_0247), mclaudin7 (NP_058583), mclaudin9 (NP_064689), mclaudin10 (a) (NP_076367), mclaudin11 (NP_032796), mclaudin12 (NP_075028), mclaudin13 (NP_065250), mclaudin14 (NP_001159398), mclaudin15 (NP_068365), mclaudin16 (NP_444471), claudin17 (NP_852467), mclaudin18(NP_062789), mclaudin19(1)(NP_001033679), Claudin19(2)(NP_694745), mclaudin20 (NP_001095030), mclaudin22 (NP_083659), mclaudin23 (NP_082274), fly_Sinuous (a) (NP_647971), fly_Megatrachea (NP_726742), fly_CG3770 (NP_611985.), fly_Kune-kune (NP_610179), mEMP2 (NP_031955), mPMP22 (NP_032911), mEMP3(NP_001139818), mEMP1(NP_034258), mPERP(NP_071315), LIM2 (NP_808361)