Table 3.
Genome-wide significant SNPs for final conformation score and dairy character traits
| Trait | SNP name | Chr. | Position (bp) | Nearest gene | Distance (bp) | Heritability | Threshold |
|---|---|---|---|---|---|---|---|
| Conformation (final score) |
ARS-BFGL-NGS-109711 |
5 |
110149999 |
ANKRD54 |
within |
0.00980 |
0.00942 |
| Dairy character |
ARS-BFGL-NGS-14022 |
3 |
35255950 |
SLC25A24 |
45,501 |
0.01490 |
0.00929 |
| BTB-01238380 |
12 |
53100776 |
SCEL |
within |
0.00936 |
0.00929 |
|
| ARS-BFGL-NGS-55380 |
16 |
21821449 |
SPATA17 |
14,623 |
0.00990 |
0.00929 |
|
| Angularity |
ARS-BFGL-NGS-14022 |
3 |
35255950 |
SLC25A24 |
45,501 |
0.01100 |
0.00969 |
| ARS-BFGL-NGS-113826 | 12 | 17150394 | HTR2A | 261,113 | 0.01320 | 0.00969 |
Note: Heritability and threshold were obtained using the LASSO method. Nearest gene are symbols of gene full name in the NCBI database (http://www.ncbi.nlm.nih.gov/).