Table 4.
Genome-wide significant SNPs for capacity and the component traits
| Trait | SNP name | Chr. | Position (bp) | Nearest gene | Distance (bp) | Heritability | Threshold |
|---|---|---|---|---|---|---|---|
| Capacity |
Hapmap40339-BTA-117016 |
3 |
10640386 |
DARC |
7,094 |
0.01100 |
0.00894 |
| ARS-BFGL-NGS-114456 |
7 |
30964539 |
LOC789456 |
97,615 |
0.01100 |
0.00894 |
|
| ARS-BFGL-NGS-44162 |
9 |
39626344 |
LOC539486 |
within |
0.01160 |
0.00894 |
|
| ARS-BFGL-NGS-26589 |
18 |
4852600 |
NUDT7 |
137,863 |
0.01080 |
0.00894 |
|
| ARS-BFGL-NGS-115067 |
25 |
37927752 |
TMEM130 |
8,967 |
0.01280 |
0.00894 |
|
| Stature |
Hapmap60794-rs29022851 |
6 |
115008971 |
CPEB2 |
within |
0.01110 |
0.00953 |
| BTA-72885-no-rs |
29 |
19560064 |
LOC782090 |
81,135 |
0.01370 |
0.00953 |
|
| Body depth |
Hapmap40339-BTA-117016 |
3 |
10640386 |
DARC |
7,094 |
0.00884 |
0.00872 |
| Loin strength |
ARS-BFGL-NGS-70552 |
15 |
35177124 |
SERGEF |
within |
0.01340 |
0.00895 |
| BTB-00938945 |
26 |
32943986 |
GPAM |
19,414 |
0.00908 |
0.00895 |
|
| Height at front end |
BTB-01238380 |
12 |
53100776 |
SCEL |
within |
0.00875 |
0.00811 |
| Animal size |
ARS-BFGL-NGS-115067 |
25 |
37927752 |
TMEM130 |
8,967 |
0.01130 |
0.00953 |
| Chest width |
BTA-110160-no-rs |
8 |
81389800 |
GAS1 |
121,119 |
0.01870 |
0.00969 |
| ARS-BFGL-NGS-115466 |
18 |
10002426 |
CDH13 |
within |
0.01410 |
0.00969 |
|
| BTA-45515-no-rs |
19 |
43170256 |
PTRF |
8,091 |
0.01220 |
0.00969 |
|
| BTB-00922140 |
4 |
82550244 |
POU6F2 |
54,944 |
0.01070 |
0.00969 |
|
| ARS-BFGL-NGS-57462 | 25 | 8086468 | LOC538487 | 131,274 | 0.01030 | 0.00969 |
Note: Heritability and threshold were obtained using the LASSO method. Nearest gene are symbols of gene full name in the NCBI database (http://www.ncbi.nlm.nih.gov/).