Table 2.
Table shows SNPs identified as being significant in this study and genes (not associated with fatness) located 0.5 Mb upstream or downstream from each SNP, discovered through the interrogation of the Illumina SNP60 BeadChip
|
Duroc | ||
|---|---|---|
| SNP ID | Genes upstream | Genes downstream |
| INRA0003205 |
SH3BGRL2, ELOVL4, TTK |
LCA5, HMGN3 |
| INRA0002667 |
- |
MANEA |
| ALGA0010375 |
STRBP, GPR21, ZBTB6, RC3H2 |
CRB2, DENNDIA |
| MARC0026060 |
- |
- |
| MARC0051272 |
- |
- |
| INRA0005757 |
IFNB1, PTPLAD2, KIAA1797 |
MLLT3 |
| ALGA0006852 |
NOX5 |
GLCE, KIF23, PAQR5 |
| ASGA0003731 |
TTK, ELOVL4 |
SH3BGRL2 |
| DRGA0002899 |
BBOX1, CCDC34, LIN7C, LGR4 |
SLC5A12, ANO3, MUC15 |
| ALGA0019845 |
SLC1A4, RAB1A, CEP68 |
SERTAd2, AFTPH |
| ASGA0014296 |
PHF2, FAM120A |
BARX1, PTPDC1 |
| MARC0074041 |
UXS1, NCK2 |
FHL2 |
| MARC0068661 |
FAM78B |
UCK2 |
| INRA0014911 |
TOX |
- |
| MARC0005831 |
- |
PEX2 |
| ALGA0031998 |
- |
- |
| ALGA0031986 |
- |
PLEKHA5 |
| DRGA0006714 |
DSC1 |
RNF125 |
| ASGA0095121 |
GLTPD1, TTLL10 |
MIB2, CDK11A |
| ALGA0117693 |
EFS15, RNF11, TTC39A, CDKN2C |
- |
| H3GA0024542 |
- |
- |
| MARC0045989 |
CNOT6L, MRPL1 |
FRAS1, NPY2R |
| DIAS0001163 |
- |
- |
| ALGA0115519 |
- |
PHF14 |
| MARC0022409 |
PAK1 |
INTS4, KCTD14, ALG8 |
| MARC0001591 |
CD300LB, RAB37, NAT9, GRIN2C, FADS6 |
- |
| MARC0016326 |
RNF43, BZRAP1 |
SEPT4, TEX14 |
| ALGA0066217 |
RAD51C |
TRIM37 |
| ALGA0066214 |
SUPT4H1, RNF43, BZRAP1 |
MTMR4, SEPT4, TEX14 |
| ASGA0058594 |
RAP2B |
P2RY1 |
| H3GA0036520 |
RYBP |
EIF4E3 |
| ALGA0073528 |
- |
C21orf7, BACH1 |
| MARC0032428 |
GOLIM4 |
MECOM |
| ASGA0102446 |
PTX3, VEPH1 |
SHOX2, RSRC1 |
| ALGA0122006 |
CD47, IFT57, HHLA2, MYH15 |
KIAA1524, DZIP3, RETNLB |
| DRGA0012091 |
- |
RBMS3 |
| ALGA0070937 |
LRRTM4 |
- |
| INRA0040988 |
OSTN, UTS2D, CCDC50 |
- |
| DRGA0012752 |
MBNL1 |
P2RY1 |
| ALGA0109563 |
- |
- |
| H3GA0040313 |
NID1, GPR137B, ERO1LB |
GNG4, TBCE, B3GALNT2, GGPS1 |
| ALGA0080178 |
MBL2 |
DKK1, PRKG1 |
| ALGA0080086 |
- |
- |
| ALGA0083515 |
- |
- |
| ASGA0070192 |
MYO1B |
OBFC2A, SDPR |
| MARC0015113 |
COPS7B, PDE6D, NMUR1, NCL |
D1S3L2, ECEL1, CHRND, CHRHG |
| ALGA0085117 |
- |
- |
| ASGA0095282 |
- |
- |
| ALGA0094547 |
IDH3B, TMC2 |
STK35, PDYN |
| ASGA0075751 |
- |
SPTLC3, TASP1 |
| ASGA0075610 |
PLCB1, PLCB4 |
- |
|
SLLW | ||
| SNP ID |
Genes upstream |
Genes downstream |
| ALGA0039930 |
LRRC1 |
C6orf142 |
| ALGA0040140 |
COL21A1 |
- |
| ALGA0040529 |
GLO1 |
DNAH8 |
| ASGA0032973 |
- |
- |
| DRGA0015258 |
ATP5G3 |
- |
| ASGA0070042 |
ATP53G |
- |
| ALGA0086180 |
- |
HOXD11 |
| MARC0049797 |
CCDC141 |
SESTD1 |
| ASGA0070135 |
SESTD1 |
- |
| INRA0049850 |
SSFA2 |
PPP1R1C |
| ASGA0070147 |
DNAJC10 |
- |
| ALGA0115880 |
- |
- |
| MARC0085425 |
- |
AGPS |
|
Titan | ||
| SNP ID |
Genes upstream |
Genes downstream |
| ASGA0014024 |
- |
ABCC1 |
| MARC0044718 |
- |
- |
| ASGA0042741 |
FAM55D |
- |
| ASGA0048928 |
PRKCQ |
SFMBT2 |
| MARC0069967 |
LARS2 |
- |
| DRGA0012769 |
MME |
GMPS |
| ASGA0058709 |
- |
TBL1XR1 |
| DRGA0013970 |
RHOBTB1 |
- |
| ALGA0109681 |
GYPC |
- |
| MARC0078259 | - | DTD1 |