Table 2.
Distribution of dehydration stress responding genes according to GO function
|
[+/+] |
[-/-] |
[+/-] |
[-/+] |
[+/=] |
[-/=] |
[=/+] |
[=/-] |
||
|---|---|---|---|---|---|---|---|---|---|
| 362 | 310 | 857 | 434 | 2177 | 2439 | 798 | 573 | ||
| Ribosomal and protein synthesis |
1 |
31(10%) |
1 |
0 |
10 (0.5%) |
135 (5%) |
2 |
26 (5%) |
|
| Response to salt |
25 (7%) |
8 (3%) |
84 (10%) |
14 (3%) |
154 (7%) |
55 (2%) |
35 (4%) |
24 (4%) |
|
| Response to cold/heat |
28 (8%) |
18 (8%) |
53 (6%) |
19 (4%) |
147 (7%) |
72 (3%) |
40 (5%) |
46 (7%) |
|
| Response to ABA |
24 (7%) |
6 (2%) |
80 (9%) |
12 (1%) |
143 (7%) |
38 (1%) |
39 (5%) |
24 (4%) |
|
| LEA |
12 (3%) |
0 |
4 |
2 |
9 |
2 |
5 (0.7%) |
0 |
|
| Response to light |
18 (5%) |
25 (8%) |
28 (3%) |
24(6%) |
68 (3%) |
101 (4%) |
47 (6%) |
27 (5%) |
|
| |
UV |
3 |
2 |
4 |
5 |
10 |
18 |
12 |
6 |
| |
Intensity |
11 |
10 |
13 |
11 |
40 |
66 |
27 |
14 |
| |
Red/far red |
2 |
12 |
7 |
3 |
14 |
16 |
6 |
7 |
| |
Blue |
2 |
1 |
3 |
5 |
2 |
10 |
2 |
0 |
| Circadian rhythm |
1 |
1 |
13 |
6 |
11 |
23 |
8 |
12 |
|
| Chloroplast |
12 (3%) |
75 (24%) |
20 (2%) |
22 (5%) |
48 (2%) |
203 (8%) |
26 (3%) |
75 (15%) |
|
| Thylakoid membrane |
0 |
53 (17%) |
6 (0.7%) |
9 (2%) |
14 |
177 (7%) |
7 (1%) |
22 (4%) |
|
| Membrane |
30 (8%) |
23 (7%) |
106 (12%) |
41 (10%) |
312 (14%) |
233 (10%) |
73 (9%) |
71 (14%) |
|
| TM transport, porins |
20 (5%) |
6 (2%) |
62 (7%) |
26 (5%) |
138 (7%) |
95 (4%) |
50 (6%) |
24 (4%) |
|
| Wall/PM |
13 (3%) |
25 (8%) |
30 (3%) |
22 (5%) |
48 (2%) |
129 (5%) |
38 (4%) |
37 (6%) |
|
| Kinases, recepors, signal trans-duction |
4 |
16 (5%) |
52 (6%) |
31 (7%) |
107 (5%) |
111 (5%) |
25 (3%) |
21 (4%) |
|
| Response to auxin |
9 (2%) |
5 (2%) |
43 (4%) |
10 (1%) |
66 (3%) |
48 (2%) |
12 (1%) |
12 (2%) |
|
| Response to ethylene |
4 (1%) |
3 (1%) |
53 (6%) |
8 (2%) |
87 (4%) |
24 (1%) |
12 (%) |
8 (1%) |
|
| Response to GA |
2 (1%) |
5 (2%) |
10 (1%) |
7 (1%) |
13 |
18 (0.7%) |
13 (1%) |
5 (1%) |
|
| Response to JA |
7 (2%) |
16 (5%) |
121 (14%) |
19 (2%) |
89 (4%) |
46 (2%) |
13 (1%) |
21 (4%) |
|
| Response to SA |
4 (1%) |
5 (2%) |
41 (5%) |
13 (3%) |
63 (3%) |
24 (1%) |
14 (1%) |
12 (2%) |
|
| Transcription factors |
29 (8%) |
6 (2%) |
73 (7%) |
25 (6%) |
161 (7%) |
100 (4%) |
51(2%) |
22 (4%) |
|
| |
AP2/ERF |
5 |
1 |
16 |
2 |
19 |
10 |
1 |
3 |
| |
bHLH |
2 |
1 |
16 |
2 |
11 |
16 |
5 |
0 |
| |
homeo_ZIP |
3 |
1 |
6 |
3 |
25 |
16 |
8 |
3 |
| |
MYB |
4 |
1 |
8 |
3 |
16 |
9 |
10 |
4 |
| |
ZF |
3 |
2 |
6 |
11 |
41 |
28 |
12 |
4 |
| |
B_ZIP |
4 |
0 |
4 |
2 |
13 |
1 |
3 |
0 |
| |
NAC |
1 |
0 |
7 |
1 |
13 |
1 |
3 |
0 |
| |
GRAS |
1 |
0 |
2 |
0 |
3 |
6 |
1 |
2 |
| |
HSF |
1 |
0 |
3 |
0 |
4 |
0 |
2 |
1 |
| |
CCAAT |
3 |
0 |
0 |
0 |
2 |
3 |
2 |
0 |
| WRKY | 2 | 0 | 5 | 1 | 14 | 4 | 1 | 1 | |
Number of genes and percentages per memory group are reported. Only percentages higher than 0.7 are reported; higher than 1% are rounded to the nearest integer.