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. 2013 Sep 25;31(1):59–69. doi: 10.1093/molbev/mst166

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© The Author 2013. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Fig. 3. — Genomic context for intact (having no exons under P/A variation), E-PAV (having at least one, but not all, exons missing in at least one accession), and CDS-PAV (having the entire CDS missing in at least one accession) genes. Averaged values for the genes in each set are given for, from top to bottom, the intergenic distance, the percentage of TE bases in the nongenic sequence of a 10-kb window centered on that gene’s midpoint, and the percentage of recombinogenic motifs in the genic sequence of a 1-kb window centered on that gene’s midpoint. See also supplementary tables 3 and 4 (Supplementary Material online) for the values of specific TE families and other window sizes.