TABLE 1.
Data set | Tetrasulfide dimer | Tetrasulfide dimer reduced | Nonasulfide dimer | Bet v 1 Y5F |
---|---|---|---|---|
Accession number | 4BKC | 4BK6 | 4BKD | 4BK7 |
Data collection | ||||
Space group | P21 | P21 | C2 | P21 |
Cell dimensions | ||||
a, b, c (Å) | 39.9, 61.0, 59.7 | 40.1, 61.2 60.1 | 112.9, 44.7, 32.0 | 32.7, 55.8, 38.1 |
α, β, γ | 90, 107, 90 | 90, 107, 90 | 90, 91, 90 | 90, 93, 90 |
Wavelength (Å) | 0.8865 | 0.8865 | 0.8865 | 0.8865 |
Number of unique reflections | 27,922 | 34,452 | 52,883 | 47,976 |
Resolution (Å) | 41.62-1.73 | 57.33-1.63 | 56.45-1.17 | 55.81-1.14 |
Rmerge (%) | 0.119 (0.634) | 0.062 (0.615) | 0.027 (0.594) | 0.035 (0.268) |
Completeness (%) | 98.1 (98.0) | 99.5 (99.0) | 97.8 (91.4) | 96.3 (80.7) |
Redundancy | 3.0 (3.0) | 3.4 (3.5) | 3.2 (2.8) | 3.2 (2.4) |
I/σ(I) | 5.7 (1.1) | 13.2 (1.9) | 17.0 (2.0) | 17.1 (3.5) |
Wilson B-factor | 19.5 | 20.6 | 13.5 | 9.4 |
Refinement statistics | ||||
Resolution range (Å) | 56.97–1.73 | 57.33–1.63 | 56.45–1.17 | 38.04–1.14 |
Number of unique reflections | 26,644 | 32,699 | 50,194 | 45,515 |
Rwork/Rfree (%) | 20.12/24.67 | 18.1/23.8 | 17.7/20.2 | 13.4/17.5 |
Number of atoms | ||||
Protein | 2,533 | 2,548 | 1,319 | 1,403 |
Water | 219 | 428 | 198 | 209 |
RMSD from ideal values | ||||
Bond lengths (Å) | 0.005 | 0.004 | 0.008 | 0.012 |
Bond angles (°) | 0.906 | 0.930 | 1.431 | 1.547 |
Average B-factors (Å2) | ||||
Protein | 19.56 | 19.54 | 17.07 | 12.47 |
Solvent | 24.60 | 29.94 | 27.59 | 25.94 |