Table 1.
A comparison of the major classes of repetitive sequences in sex chromosomal and autosomal BAC clones in Pogona vitticeps
|
Repeat class |
Sex chromosome BAC clones |
Autosome BAC clone |
||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| |
Pv03_L07 (98 kb) |
Pv151_P16 (183 Kb) |
Pv159_B13 (113 Kb) |
Pv237_P23 (202 kb) |
Pv151_D05 (156 Kb) |
Pv176_G09 (145 Kb) |
Pv100_O13 (139 kb) |
Pv215_D15 (134 Kb) |
||||||||
| Fragments | Size (bp) | Fragments | Size (bp) | Fragments | Size (bp) | Fragments | Size (bp) | Fragments | Size (bp) | Fragments | Size (bp) | Fragments | Size (bp) | Fragments | Size (bp) | |
| Integrated virus |
0 |
0 |
0 |
0 |
1 |
47 |
1 |
47 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| Interspersed repeat |
1 |
49 |
3 |
254 |
2 |
126 |
1 |
49 |
1 |
77 |
2 |
165 |
0 |
0 |
0 |
0 |
| DNA transposon |
30 |
2872 |
53 |
4050 |
37 |
3250 |
69 |
5288 |
58 |
4343 |
58 |
5283 |
49 |
6140 |
40 |
4906 |
| Endogenous retrovirus |
23 |
5252 |
39 |
6836 |
9 |
489 |
16 |
1036 |
11 |
726 |
25 |
1888 |
16 |
1132 |
14 |
990 |
| LTR transposon |
37 |
12385 |
87 |
25553 |
48 |
9078 |
82 |
12342 |
61 |
5673 |
44 |
3613 |
66 |
4350 |
71 |
5287 |
| Non-LTR transposon |
58 |
17770 |
101 |
28645 |
74 |
17366 |
148 |
46284 |
121 |
40003 |
46 |
5767 |
51 |
5000 |
54 |
5448 |
| Pseudogene |
0 |
0 |
0 |
|
0 |
0 |
1 |
68 |
1 |
68 |
2 |
173 |
0 |
0 |
0 |
0 |
| Simple repeat |
21 |
2189 |
35 |
3743 |
6 |
597 |
37 |
3710 |
29 |
2941 |
0 |
0 |
2 |
137 |
2 |
133 |
| Total |
170 |
40517 |
318 |
69081 |
177 |
30953 |
355 |
68824 |
282 |
53831 |
177 |
16889 |
184 |
16759 |
181 |
16764 |
| Proportion (%) | 41.3439 | 37.74918 | 27.392 | 34.0713 | 34.5071 | 11.6476 | 13.9658 | 10.4775 | ||||||||