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. Author manuscript; available in PMC: 2014 Jan 5.
Published in final edited form as: Cold Spring Harb Symp Quant Biol. 2011 Dec 12;76:10.1101/sqb.2011.76.011049. doi: 10.1101/sqb.2011.76.011049

Table 1.

Other selected predicted conserved targets of miR-33a/b involved in lipid homeostasis.

Target
gene
Gene name #
sites
Target
scan
PICTAR miRanda targeted in
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 3 x x x Hsa, Ptr, Mmu, Rno, Cfa, Mdo, Oan, Gga, Xtr
CROT Carnitine O-octanoyltransferase 2 x (x) x Hsa, Ptr, Mmu, Rno, Fca, Aca, Gga
MRPS25 Mitochondrial ribosomal protein S25 2 x x x Hsa, Ptr, Mmu, Rno, Cfa, Mdo, Oan, Gga
NPC1 Niemann-Pick disease, type C1 2 x x Hsa, Ptr, Mmu, Rno, Cfa, Gga
SIRT6 Sirtuin (silent mating type information regulation 2 homolog) 6 (S. cerevisiae) 1 x x Hsa, Ptr, Mmu, Cfa
PRKAA1 Protein kinase, AMP-activated, alpha 1 catalytic subunit 2 x x x Hsa, Ptr, Mmu, Rno, Cfa, Mdo, Gga, Xtr
HADHB Hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit 1 x x x Hsa, Ptr, Mmu, Rno, Cfa, Mdo, Oan, Gga
SNF1LK SNF1-like kinase 1 x x x Hsa, Ptr, Mdo, Oan, Gga
IRS-2 Insulin receptor substrate 2 1 x x x Hsa, Ptr, Mmu, Rno, Cfa, Mdo, Oan
HMGCR 3-hydroxy-3-methylglutaryl-Coenzyme A reductase 1 x x Hsa, Ptr, Mmu, Oan
CS Citrate synthase 1 x x Hsa, Ptr, Cfa, Oan, Xtr
CPT1A Carnitine palmitoyltransferase 1A (liver) 1 x Hsa, Mmu, Rno, Cfa, Gga, Dme

Selected conserved miR-33a/b targets involved in cholesterol/lipid and energy homeostasis as predicted by TargetScan (Grimson et al. 2007), PICTAR, and miRanda.

Hsa = human; Ptr = chimpanzee; Mmu = mouse; Rno = rat; Cfa = dog; Fca = Cat; Mdo = opossum; Oan = platypus; Gga = chicken Xtr = frog; Dme = fruitfly