Table 1.
Other selected predicted conserved targets of miR-33a/b involved in lipid homeostasis.
Target gene |
Gene name | # sites |
Target scan |
PICTAR | miRanda | targeted in |
---|---|---|---|---|---|---|
ABCA1 | ATP-binding cassette, sub-family A (ABC1), member 1 | 3 | x | x | x | Hsa, Ptr, Mmu, Rno, Cfa, Mdo, Oan, Gga, Xtr |
CROT | Carnitine O-octanoyltransferase | 2 | x | (x) | x | Hsa, Ptr, Mmu, Rno, Fca, Aca, Gga |
MRPS25 | Mitochondrial ribosomal protein S25 | 2 | x | x | x | Hsa, Ptr, Mmu, Rno, Cfa, Mdo, Oan, Gga |
NPC1 | Niemann-Pick disease, type C1 | 2 | x | x | Hsa, Ptr, Mmu, Rno, Cfa, Gga | |
SIRT6 | Sirtuin (silent mating type information regulation 2 homolog) 6 (S. cerevisiae) | 1 | x | x | Hsa, Ptr, Mmu, Cfa | |
PRKAA1 | Protein kinase, AMP-activated, alpha 1 catalytic subunit | 2 | x | x | x | Hsa, Ptr, Mmu, Rno, Cfa, Mdo, Gga, Xtr |
HADHB | Hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit | 1 | x | x | x | Hsa, Ptr, Mmu, Rno, Cfa, Mdo, Oan, Gga |
SNF1LK | SNF1-like kinase | 1 | x | x | x | Hsa, Ptr, Mdo, Oan, Gga |
IRS-2 | Insulin receptor substrate 2 | 1 | x | x | x | Hsa, Ptr, Mmu, Rno, Cfa, Mdo, Oan |
HMGCR | 3-hydroxy-3-methylglutaryl-Coenzyme A reductase | 1 | x | x | Hsa, Ptr, Mmu, Oan | |
CS | Citrate synthase | 1 | x | x | Hsa, Ptr, Cfa, Oan, Xtr | |
CPT1A | Carnitine palmitoyltransferase 1A (liver) | 1 | x | Hsa, Mmu, Rno, Cfa, Gga, Dme |
Selected conserved miR-33a/b targets involved in cholesterol/lipid and energy homeostasis as predicted by TargetScan (Grimson et al. 2007), PICTAR, and miRanda.
Hsa = human; Ptr = chimpanzee; Mmu = mouse; Rno = rat; Cfa = dog; Fca = Cat; Mdo = opossum; Oan = platypus; Gga = chicken Xtr = frog; Dme = fruitfly