Table 6.
Sequence identities between intact contigs in Geraniaceae and Arabidopsis thaliana sigma factors
|
Arabidopsis thaliana
|
Geranium maderense
|
Pelargonium
x
hortorum
|
||
|---|---|---|---|---|
| Sequence identity (%) a | Nucleotide | Amino acid | Nucleotide | Amino acid |
| Sig 1 |
64.5 |
52.4 |
61.1 |
50.4 |
| Sig 2 |
62.6 |
48.9 |
62.5 |
47.1 |
| Sig 3 |
57.7 |
39.9 |
58.6 |
43.3 |
| Sig 4 |
58.6 |
42.6 |
58.3 |
43.5 |
| Sig 5 |
64.3 |
54.1 |
65.8 |
55.0 |
| Sig 6 | 58.6 | 41.1 | 59.6 | 42.4 |
aIn cases where there is more than one intact contig for a sigma factor, the one with highest sequence identity to Arabidopsis was selected for comparison.