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. 2013 Dec 13;13:213. doi: 10.1186/1471-2229-13-213

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Copyright © 2013 Urbany et al.; licensee BioMed Central Ltd.

This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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GO-term analysis of the significantly regulated genes across all two-way comparisons. Significantly most enriched GO-terms (FDR < 0.05) for cellular component (A), biological process (B) and molecular functions GOs (C) are plotted according to increasing enrichment (dotted line) of the percentage of genes in the RNA-Seq gene set (grey bars) compared to that of the maize reference set (black bars). Cellular Component GOs - GO:0031226 intrinsic to plasma membrane, GO:0005829 cytosol, GO:0044459 plasma membrane part, GO:0030054 cell junction, GO:0005911 cell-cell junction, GO:0005886 plasma membrane, GO:0009536 plastid, GO:0005730 nucleolus, GO:0005773 vacuole, GO:0009507 chloroplast, GO:0044437 vacuolar part. GO:0005774 vacuolar membrane. Biological Process GOs - GO:0048518 positive regulation of biological process, GO:0048522 positive regulation of cellular process, GO:0032502 developmental process, GO:0042401 cellular biogenic amine biosynthetic process, GO:0009719 response to endogenous stimulus, GO:0042398 cellular amino acid derivative biosynthetic process, GO:0048731 system development, GO:0009698 phenylpropanoid metabolic process, GO:0006555 methionine metabolic process, GO:0055082 cellular chemical homeostasis, GO:0010033 response to organic substance, GO:0009617 response to bacterium, GO:0009607 response to biotic stimulus, GO:0048856 anatomical structure development, GO:0010038 response to metal ion, GO:0010035 response to inorganic substance, GO:0040007 growth, GO:0051707 response to other organism, GO:0048869 cellular developmental process, GO:0070887 cellular response to chemical stimulus, GO:0008361 regulation of cell size. Molecular Function GOs - GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, GO:0003993 acid phosphatase activity, GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, GO:0015103 inorganic anion transmembrane transporter activity.