Table 2. Exome sequencing-based CNV calls in HapMap samples.

Method	Numberof CNVs	Validation dataset	Number ofoverlapping CNVs	Positive predictivevalue	Sensitivity
Outlier-based calling method with type10	40	3,330 arrayCGH calls	37	93%	1.1%
Outlier-based calling method withtype20 including type10	65		55	85%	1.7%
CoNIFER	32		26	81%	0.8%
ExomeDepth	1,555		253	16%	7.6%