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. 2013 Nov 19;14:804. doi: 10.1186/1471-2164-14-804

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Copyright © 2013 Lei et al.; licensee BioMed Central Ltd.

This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Phylogenetic analysis of the 11 EBV genomes based on variations in the alignment of DNA and protein sequences of the 11 EBV strains. Phylogenetic trees based on (A) DNA sequence alignment of the 11 EBV genomes. (B) Protein sequence alignment of LMP-1. (C) Protein sequence alignment of EBNA-1. GD2 EBNA-1 is not included because the original GD2 EBNA-1 protein sequence is not available. Alignment was done with the Kalign (for DNA) and Clustal Omega (for protein) program in EBI; Phylogenetic analysis was performed using MEGA software (version 5), by Neighbour-joining (NJ) algorithm. The divergence scale (showing numbers of substitutions per site) is indicated at the foot of each tree.