Table 1.
Comparison of RefSeq orthology vs. HomoloGene
| Organism | RefSeq orthologs | Avg. synteny support 1 | HG orthologs | Orthologs that agree with HG | Orthologs in conflict with HG | Percent that agree with HG | RefSeq orthologs not in HG | In HG, not in RefSeq orthologs |
|---|---|---|---|---|---|---|---|---|
| Chimpanzee |
17070 |
4.7 |
16037 |
15042 |
14 |
99.9% |
1937 |
995 |
| Mouse |
16174 |
5.0 |
16514 |
15605 |
60 |
99.6% |
407 |
909 |
| Rhesus macaque |
15981 |
4.4 |
15144 |
13668 |
39 |
99.7% |
2146 |
1476 |
| Cow |
15910 |
4.7 |
15813 |
14781 |
38 |
99.7% |
974 |
1032 |
| Dog |
15890 |
4.7 |
15904 |
15016 |
40 |
99.7% |
721 |
888 |
| Rat |
15231 |
4.4 |
15200 |
13480 |
51 |
99.6% |
1566 |
1720 |
| Chicken |
11201 |
4.1 |
12141 |
10618 |
30 |
99.7% |
497 |
1523 |
| Zebrafish | 5799 | 2.1 | 10786 | 4851 | 11 | 99.8% | 667 | 5935 |
Comparisons are made to HomoloGene (HG) clusters containing a single gene from human and the indicated species, using data from HG Release 67 (Dec 13, 2012).
1out of 6 flanking loci assayed for each orthologous gene.