Table 2.
Ortholog dataset used in current analysis
| Tax ID | Organism | Annotation release date | Genes in ortholog dataset | Annotated protein-coding genes | % Pipeline prediction | EST count | Assembly accession | Contig N50 | Scaffold N50 |
|---|---|---|---|---|---|---|---|---|---|
| 7955 |
*zebrafish |
3/24/2011 |
5481 |
26329 |
48 |
1,481,937 |
GCF_000002035.4 |
1,073,451 |
1,551,602 |
| 8128 |
nile tilapia |
9/30/2011 |
5898 |
22130 |
100 |
120,196 |
GCF_000188235.1 |
29,493 |
2,802,423 |
| 8364 |
western clawed frog |
7/29/2010 |
9611 |
21989 |
62 |
1,271,375 |
GCF_000004195.1 |
17,038 |
1,567,461 |
| 9031 |
*chicken |
12/16/2011 |
11170 |
16725 |
71 |
600,433 |
GCF_000002315.3 |
279,750 |
12,877,381 |
| 9103 |
turkey |
3/25/2011 |
8981 |
12129 |
100 |
17,435 |
GCF_000146605.1 |
12,520 |
857,645 |
| 9258 |
platypus |
9/3/2011 |
6917 |
16477 |
99 |
9,699 |
GCF_000002275.2 |
11,554 |
958,970 |
| 9305 |
tasmanian devil |
7/16/2012 |
12456 |
19365 |
100 |
0 |
GCF_000189315.1 |
20,139 |
1,847,106 |
| 9483 |
white-tufted-ear marmoset |
6/8/2012 |
15191 |
19408 |
100 |
2,605 |
GCF_000004665.1 |
29,293 |
5,167,444 |
| 9544 |
rhesus macaque |
6/2/2010 |
15228 |
22541 |
97 |
58,412 |
GCF_000002255.3 |
25,707 |
6,094,595 |
| 9555 |
olive baboon |
9/5/2012 |
15583 |
21785 |
98 |
145,582 |
GCF_000264685.1 |
40,262 |
528,927 |
| 9593 |
western gorilla |
12/6/2012 |
16250 |
22059 |
100 |
0 |
GCF_000151905.1 |
11,661 |
913,458 |
| 9597 |
pygmy chimpanzee |
7/25/2012 |
16519 |
20463 |
100 |
0 |
GCF_000258655.1 |
66,775 |
10,124,892 |
| 9598 |
chimpanzee |
10/27/2012 |
16997 |
21396 |
96 |
17,130 |
GCF_000001515.5 |
50,679 |
8,925,874 |
| 9601 |
sumatran orangutan |
7/18/2012 |
14981 |
22822 |
86 |
46,981 |
GCF_000001545.4 |
15,648 |
747,460 |
| 9606 |
*human |
10/30/2012 |
18421 |
19527 |
2 |
8,699,560 |
GCF_000001405.22 |
38,508,932 |
44,983,201 |
| 9615 |
*dog |
2/2/2011 |
15784 |
19163 |
93 |
382,638 |
GCF_000002285.3 |
267,478 |
45,876,610 |
| 9646 |
giant panda |
7/30/2010 |
14466 |
17892 |
100 |
0 |
GCF_000004335.1 |
39,886 |
1,281,781 |
| 9685 |
domestic cat |
11/7/2012 |
15864 |
18201 |
98 |
919 |
GCF_000181335.1 |
20,621 |
4,658,941 |
| 9785 |
*african savanna elephant |
8/25/2011 |
14259 |
18389 |
100 |
0 |
GCF_000001905.1 |
69,023 |
46,401,353 |
| 9796 |
*horse |
6/28/2011 |
14668 |
18002 |
96 |
37,199 |
GCF_000002305.2 |
112,381 |
46,749,900 |
| 9823 |
pig |
10/11/2011 |
12283 |
21992 |
84 |
1,624,129 |
GCF_000003025.5 |
69,669 |
576,008 |
| 9913 |
*Bos taurus (bovine) |
12/2/2011 |
16013 |
21157 |
39 |
1,559,494 |
GCF_000003055.4 |
96,955 |
6,380,747 |
| 9940 |
sheep |
12/2/2012 |
15588 |
19097 |
96 |
338,483 |
GCF_000298735.1 |
40,376 |
100,079,507 |
| 9986 |
rabbit |
4/23/2010 |
9032 |
16117 |
94 |
34,938 |
GCF_000003625.2 |
64,648 |
35,972,871 |
| 10029 |
chinese hamster |
10/17/2011 |
13835 |
19702 |
99 |
0 |
GCF_000223135.1 |
39,361 |
1,147,233 |
| 10090 |
*house mouse |
10/1/2012 |
16142 |
21780 |
6 |
4,853,5*8 |
GCF_000001635.21 |
32,273,079 |
52,589,046 |
| 10116 |
*norway rat |
6/20/2012 |
15718 |
22719 |
29 |
1,103,577 |
GCF_000001895.4 |
59,469 |
2,178,346 |
| 10141 |
*domestic guinea pig |
10/3/2011 |
14436 |
18029 |
98 |
19,975 |
GCF_000151735.1 |
80,583 |
27,942,054 |
| 13616 |
gray short-tailed opossum |
5/31/2011 |
12942 |
17924 |
98 |
265 |
GCF_000002295.2 |
108,014 |
59,809,810 |
| 27679 |
*bolivian squirrel monkey |
9/9/2012 |
16089 |
19331 |
100 |
0 |
GCF_000235385.1 |
38,823 |
18,744,880 |
| 28377 |
*green anole |
3/30/2011 |
10041 |
15645 |
100 |
156,802 |
GCF_000090745.1 |
79,867 |
4,033,265 |
| 30611 |
small-eared galago |
7/18/2012 |
15596 |
19454 |
100 |
0 |
GCF_000181295.1 |
27,100 |
13,852,661 |
| 31033 |
torafugu |
11/6/2012 |
5560 |
18592 |
98 |
0 |
GCF_000180615.1 |
52,883 |
928,938 |
| 61853 | northern white-cheeked gibbon | 5/6/2011 | 15209 | 19556 | 100 | 0 | GCF_000146795.1 | 35,148 | 22,692,035 |
The assembly name, assembly accession, contig N50, and scaffold N50 are reported from the NCBI Assembly resource. The % pipeline prediction column indicates the percent of annotated computationally predicted proteins (XP accession prefixes) out of the total annotated proteins (XP and NP accession prefixes). Reference species are flagged with * in the Organism column. EST count refers to the number of same-species ESTs that were available at the date of the annotation run; some annotation runs also used cross-species transcript data or 454 RNAseq data.