Table 1. Applications for RNA-guided Cas9 proteins.
Origin | Gene | Purpose | Application | Addgene # | Reference |
---|---|---|---|---|---|
Cas9CSN, (H840A mutant) complementary strand nickase; Cas9D, catalytically inactive/dead; Cas9NSN, (D10A mutant) non-complementary strand nickase; CRISPRi, CRISPR-interference; DSB, double-strand DNA break; hCas9, mammalian codon optimized; hum/mus, human and mouse; SSN, single-strand nick; wCas9, worm codon optimized; zCas9, zebrafish codon optimized. | |||||
S. pyogenes | Cas9 | DSB | in vitro | 39312 | [96] |
Cas9CSN | SSN | in vitro | 39316 | ||
Cas9NSN | SSN | in vitro | 39315 | ||
Cas9D | dead | in vitro | 39318 | ||
L. innocua | Cas9 | DSB | in vitro | 39313 | |
S. thermophilus | Cas9 | DSB | in vitro | 39314 | |
N. meningitidis | Cas9 | DSB | in vitro | 39317 | |
S. pyogenes | hCas9 | editing | hum/mus | 42234 | [22] |
S. pyogenes | hCas9 | editing | hum/mus | 42230 | [16] |
hCas9NSN | editing | hum/mus | 42335 | ||
hCas9 | editing | hum/mus | 42229 | ||
hCas9NSN | editing | hum/mus | 42333 | ||
S. pyogenes | hCas9 | editing | hum/mus | 41815 | [25] |
hCas9NSN | editing | hum/mus | 41816 | ||
S. pyogenes | Cas9 | editing | Bacteria | 44250 | [8] |
Cas9D | CRISPRi | Bacteria | 44249 | ||
hCas9D | CRISPRi | hum/mus | 44246 | ||
hCas9D | CRISPRi | hum/mus | 44247 | ||
S. pyogenes | Cas9 | editing | Bacteria | 42876 | [7] |
S. pyogenes | Cas9 | editing | Zebrafish | 42251 | [35] |
Cas9 | editing | hum/mus | 42252 | ||
S. pyogenes | hCas9 | editing | hum/mus | 43945 | [15] |
S. pyogenes | hCas9 | editing | hum/mus | 44719 | [18] |
hCas9NSN | editing | hum/mus | 44720 | ||
S. pyogenes | hCas9 | editing | Yeast | 43802 | [11] |
hCas9 | editing | Yeast | 43804 | ||
S. pyogenes | hCas9 | editing | hum/mus | 44758 | [59] |
S. pyogenes | hCas9D | tracking | hum/mus | 46910 | [10] |
hCas9D | repression | hum/mus | 46911 | ||
hCas9D | activation | hum/mus | 46912 | ||
hCas9D | activation | hum/mus | 46913 | ||
hCas9D | repression | Yeast | 46920 | ||
hCas9D | repression | Yeast | 46921 | ||
S. pyogenes | hCas9 | editing | Drosophila | 45945 | [30] |
hCas9 | editing | Drosophila | 46294 | ||
S. pyogenes | wCas9 | editing | C. elegans | 46168 | [41] |
S. pyogenes | hCas9 | editing | hum/mus | 43861 | Unpublished data (Joung Lab) |
S. pyogenes | hCas9 | editing | Plants | 46965 | [49] |
S. pyogenes | zCas9 | editing | Zebrafish | 46757 | [36] |
zCas9 | editing | Zebrafish | 47929 | ||
N. meningitidis | Cas9 | editing | hum/mus | 47867 | [13] |
S. pyogenes | wCas9 | editing | C. elegans | 47549 | [46] |
S. pyogenes | wCas9 | editing | C. elegans | 47911 | [39] |
S. pyogenes | wCas9 | editing | C. elegans | 47933 | [42] |