Table 1. Melting temperatures of DNA triplexes and duplexes in 4 M NaCl and 4 M choline dhpa.
Tm(°C) at 260 nmb | |||||
---|---|---|---|---|---|
Condition/Sequenceb | Tm-H | Tm-W | Tm-H&W | Tm-W | |
4 M NaCl | |||||
Ts1 (2)c | 39.4 | Ds1 (2)d | 43.8 | ||
Ts2 (4) | 14.5 | 48.1 | Ds2 (4) | 47.5 | |
Ts3 (6) | n.d.e | 51.6 | Ds3 (6) | 51.2 | |
4 M choline dhp | |||||
Ts1 (2)c | 55.5 | Ds1 (2)d | 51.4 | ||
Ts2 (4) | 49.3 | Ds2 (4) | 43.2 | ||
Ts3 (6) | 37.3 | Ds3 (6) | 40.2 |
aAll experiments were conducted in a buffer containing 50 mM Tris (pH 7.0), 1 mM Na2EDTA and 4 M NaCl or 4 M choline dhp.
bTotal DNA strand concentration of triplexes and duplexes were 30 and 20 μM, respectively.
cThe number of G*C Hoogsteen base pairs is shown in parentheses.
dThe number of G–C Watson–Crick base pairs is shown in parentheses.
en.d. indicates that the Tm-H was too low to be determined.