Table 2. Thermodynamic parameters for the formation of DNA triplexes and duplexes measured in 4 M NaCl or 4 M choline dhpa.
ΔH° (kcal mol−1) | TΔS° (kcal mol−1) | ΔG°25 (kcal mol−1) | Tmb (°C) | |
---|---|---|---|---|
4 M NaCl | ||||
iTs1 | −80.3 ± 8.7 | −67.3 ± 7.7 | −13.1 ± 2.5 | 78.5 |
iDs1 | −57.2 ± 1.1 | −48.4 ± 0.9 | −8.8 ± 0.7 | 75.3 |
4 M Choline dhp | ||||
iTs1 | −96.3 ± 8.7 | −78.8 ± 7.7 | −17.5 ± 2.5 | 83.9 |
iDs3 | −57.4 ± 1.0 | −48.5 ± 0.9 | −8.9 ± 0.7 | 77.3 |
aAll experiments were conducted in a buffer containing 50 mM Tris (pH 7.0), 1 mM Na2EDTA and 4 M NaCl or 4 M choline dhp. Thermodynamic parameters were evaluated from curve fitting.
bMelting temperature was calculated at a strand concentration of 30 μM.