(c) 10 best 5 bp motifs in never methylated region

Pattern	MEME detail positive or negative strand	Our software never methylated
TTTGC	DMPK++−	DMPK++−−−
TTCTT	DMPK++	DMPK+++
AGGCA	DMPK−+	DMPK+−
TT[AT]CT	DMPK++	DMPK++++
CCATC	DMPK+−	DMPK+−
CAGGC	DMPK++	DMPK++−−
CAGAC	DMPK−+	DMPK+−
TGACG	DMPK++	DMPK++
ACC[AT]A	DMPK−+	DMPK+−
CTGGG	DMPK++	DMPK++

Key:

+ Positive strand.

− Negative strand.

FXN_AM_1 and FXN_AM_2 are two separated regions with always methylated CpG sites.

Bold: Motif that MEME does not report all occurrences.