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. 2014 Jan 8;9(1):e84750. doi: 10.1371/journal.pone.0084750

Table 3. Association mapping for alkaline and salt tolerance indices using epistasis association mapping.

Trait Epistatic association mapping Similar results Trait Epistatic association mapping Similar results
Marker Linkage group Position (cM) LOD Var r 2 (%) E-cMLM Previous study Marker Linkage group Position (cM) LOD Var r 2 (%) E-cMLM Previous study
LR-STI sat_267 A1 78.44 6.51 1.81 1.51 LR-STI satt215 J 44.08 7.55 0.63 0.52 Chen et al (2008)
satt200 A1 92.88 4.21 0.49 0.41 satt247-satt417 K 43.95–46.2 3.08–12.64 0.29–3.20 0.24–2.66 satt102 (10) Chen et al (2008)
satt390 A2 9.14 11.09 0.07 0.06 satt463-satt245 M 50.09–53.54 3.03–4.38 0.83–1.57 0.69–1.30 Chen et al (2008)
satt632 A2 51.5 4.64 0.76 0.63 satt323 M 60.04 4.48 0.39 0.32 Chen et al (2008)
satt509 B1 32.5 12.36 0.28 0.24 Chen et al (2008) satt022 N 102.05 15.56 8.94 7.43 Lee et al (2004); Chen et al (2008)
satt453 B1 123.95 3.09 2.12 1.76 LR-ATI satt329 A2 110.94 4.95 0.74 0.22
satt565 C1 0.00 3.23 2.94 2.45 satt070 B2 72.8 3.62 4.46 1.35
satt289 C2 112.34 4.19 0.70 0.59 √(10§) Cho et al (2002) satt277 C2 107.58 3.10 7.06 2.13
sat_254 D1b 46.91 6.73 2.09 1.74 Chen et al (2008) satt514 D2 85.69 3.22 2.41 0.73 Tuyen et al (2010)
satt226 D2 85.15 4.84 2.79 2.32 sat_354☆(09), satt615(10) satt615-sat_354 D2 91.2–93.7 3.29–4.13 2.07–9.08 0.63–2.75 Tuyen et al (2010)
satt615-sat_354 D2 91.2–93.7 4.59–7.29 1.05–5.94 0.87–4.94 satt615(10), sat_354(09) satt659 F 26.7 6.34 9.40 2.84 √(09)
satt045 E 46.65 4.39 1.74 1.45 √(09) satt160 F 33.18 11.43 8.71 2.64 √(09)
sat_381 E 64.18 3.05 0.48 0.40 satt045(09) satt132 J 39.18 3.48 7.76 2.35 √(10)
AW186493 F 21.04 3.41 0.42 0.35 satt431 J 78.57 3.85 1.35 0.41 √(09)
satt160 F 33.18 4.90 2.55 2.12 satt247 K 43.95 6.06 6.02 1.82
satt309 G 4.53 4.92 2.21 1.83 Cho et al (2002) satt238 L 19.93 3.53 3.94 1.19 √(10)
AF162283 G 87.94 5.41 0.47 0.39 Chen et al (2008) satt652 L 30.87 5.63 0.86 0.26 √(09)
satt222 H 68.08 3.85 0.46 0.39 satt245 M 53.54 3.92 3.99 1.21 sat_256 (09)
sat_228 J 23.91 3.24 0.48 0.40 Chen et al (2008) satt683 N 34.52 4.66 5.44 1.64 √(09, 10)
LR-ATI sat_280 N 43.45 5.78 9.71 2.94 satt683(09, 10) FWR-ATI satt142 H 86.48 3.86 3.43 0.67 √(10)
satt237 N 74.98 4.48 1.28 0.39 satt215 J 44.08 5.37 2.40 0.47 satt414 (10)
satt022 N 102.05 10.29 13.89 4.20 satt417 K 46.2 10.28 7.33 1.44
FWR-STI satt289 C2 112.34 7.28 1.13 0.53 Cho et al (2002) sct_190 K 77.37 16.51 1.85 0.36
satt296 D1b 52.61 7.08 0.99 0.46 Chen et al (2008) satt238 L 19.93 4.61 3.13 0.62 √(09)
sat_354 D2 93.7 5.99 6.65 3.10 satt488 (10) satt527 L 70.36 7.19 1.56 0.31
satt672 D2 114.97 3.20 0.36 0.17 satt463 M 50.09 4.49 15.36 3.02 √(09)
satt649 F 5.36 4.57 3.71 1.73 satt094 O 56.58 4.55 7.44 1.46
satt659 F 26.7 3.28 3.11 1.45 DWR -STI satt045 E 46.65 3.85 2.41 0.64
satt352 G 50.52 3.20 4.04 1.89 satt138 (09) Chen et al (2008) AW186493 F 21.04 3.72 0.50 0.13
satt440 I 112.69 3.49 4.06 1.90 satt160 F 33.18 5.56 7.73 2.05
satt463 M 50.09 4.46 1.41 0.66 Chen et al (2008) satt688 G 12.54 4.20 1.19 0.32 Cho et al (2002)
sat_256 M 74.52 11.55 6.12 2.86 Chen et al (2008) satt440 I 112.69 4.20 2.78 0.74
satt022 N 102.05 9.30 4.20 1.96 Li et al (2004); Chen et al (2008) satt441 K 46.2 6.17 1.78 0.47 Chen et al (2008)
satt262 O 57.02 3.92 0.44 0.21 sct_190 K 77.37 3.23 1.51 0.40 √(09)
satt656×sat_256 F×M 135.11×74.52 3.40 33.83 15.80 satt656 (10) Chen et al (2008) satt220 M 56.29 4.39 4.19 1.11 Chen et al (2008)
FWR-ATI sat_344 A1 19.37 3.66 15.00 2.95 satt250 M 107.69 3.61 2.39 0.63 Chen et al (2008)
satt632 A2 51.5 3.38 5.11 1.00 sat_266 N 47.27 3.08 6.85 1.81 satt631(09)
satt577 B2 6.05 3.09 4.53 0.89 sat_342 (10) satt022 N 102.05 3.08 6.02 1.59 Lee et al (2004); Chen et al (2008)
AW277661 C1 74.79 4.93 5.61 1.10 DWR -ATI satt382 A1 26.42 9.90 14.04 2.85
sat_354 D2 93.7 7.23 15.26 3.00 sat_365 (10) Tuyen et al (2010) satt509-sat_261 B1 32.5–32.95 3.61–5.89 1.39–1.92 0.28–0.39
satt452 E 45.09 3.09 2.77 0.54 satt070 B2 72.8 5.12 9.98 2.03
satt160 F 33.18 6.28 21.18 4.16 staga001 C2 119.84 5.35 3.82 0.78
satt352 G 50.52 4.70 5.43 1.07
DWR-ATI satt307 C2 121.26 4.28 0.47 0.10 LH-STI satt309 G 4.53 15.41 7.39 3.25 Cho et al(2002)
satt282 D1b 76.09 3.81 6.55 1.33 sat_372 G 107.75 3.46 4.58 2.01
sat_354 D2 93.7 6.19 13.17 2.67 Tuyen et al (2010) satt132 J 39.18 4.34 4.95 2.18 Chen et al (2008)
satt263 E 45.4 4.10 4.93 1.00 satt683 N 34.52 3.34 1.66 0.73
satt149 F 18.12 3.81 1.26 0.26 sat_280-sat_266 N 43.45–47.27 3.78–4.11 2.26–5.84 0.99–2.56
satt142 H 86.48 7.14 1.88 0.38 √(2010) satt262 O 57.02 4.89 3.61 1.59
satt132 J 39.18 3.08 6.92 1.40 satt215(09,10) LH-ATI satt382 A1 26.42 3.59 8.02 3.53
satt417 K 46.2 4.11 4.51 0.92 sat_342 B2 20.3 3.31 7.76 3.42
sct_190-satt260 K 77.37–80.12 4.10–3.64 1.99–2.39 0.40–0.49 staga001 C2 119.84 11.30 8.28 3.65
satt463 M 50.09 4.23 15.36 3.12 satt323(10) satt357 C2 151.91 3.40 1.04 0.46
satt220-satt626 M 56.29–58.59 3.49–3.60 1.12–5.19 0.23–1.05 satt323 (10) sat_254 D1b 46.91 4.90 1.88 0.83 √(09)
sat_256 M 74.52 3.97 10.68 2.17 satt323 (10) satt672 D2 114.97 3.90 0.59 0.26 satt413(09)
satt592 O 100.37 3.31 9.23 1.87 sat_274 (10) satt452 E 45.09 5.51 4.65 2.05 satt685(09); satt263(10)
LH-STI satt200 A1 92.88 5.52 0.53 0.23 AW186493 F 21.04 5.16 0.68 0.30 satt160 (10)
satt632 A2 51.5 4.88 4.06 1.79 aw132402(09) satt656 F 135.11 6.18 3.39 1.49
aw132402 A2 67.86 12.53 3.20 1.41 √(09) satt309 G 4.53 4.37 5.20 2.29
sat_355 B2 66.23 4.58 1.83 0.81 Chen et al (2008) satt688 G 12.54 4.86 0.15 0.07
staga001 C2 119.84 8.20 2.64 1.16 sat_252 (09) Cho et al (2002) sat_372 G 107.75 3.04 5.81 2.56
sat_160 D1a 104.27 5.15 3.68 1.61 satt302 H 81.04 7.24 0.15 0.07
satt411 E 12.92 8.64 1.33 0.58 satt354 I 46.22 4.84 2.26 0.99 satt419 (09)
satt045 E 46.65 13.30 5.73 2.51 √(09) sat_419 I 98.11 3.46 3.68 1.62
satt160 F 33.18 6.15 10.25 4.50 satt440 I 112.69 7.93 2.18 0.96
satt260 K 80.12 4.25 1.59 0.70
LH-ATI satt255 N 76.48 3.60 0.24 0.10 BS-STI satt237 N 74.98 5.84 1.45 1.26 Lee et al (2004);Chen et al (2008)
BS-STI satt382 A1 26.42 3.50 2.79 2.42 satt022 N 102.05 4.21 3.05 2.66 Lee et al (2004);Chen et al (2008)
aw132402 A2 67.86 3.56 1.06 0.92 BS-ATI sat_344 A1 19.37 4.72 3.88 2.04
satt453 B1 123.95 4.13 1.03 0.90 satt382 A1 26.42 5.72 5.51 2.90
satt070 B2 72.8 5.28 2.11 1.84 √(09) Chen et al (2008) satt577 B2 6.05 4.84 3.19 1.68 sat_342 (10)
satt534 B2 87.58 4.21 3.08 2.68 satt070(09) AW277661 C1 74.79 5.63 2.69 1.42
AW277661 C1 74.79 4.05 0.81 0.71 satt422 C2 44.66 4.22 0.11 0.06
satt640 C2 30.46 3.20 0.37 0.32 staga001 C2 119.84 10.08 4.52 2.38 √(09)
satt422 C2 44.66 3.73 0.73 0.63 satt669 D2 67.7 4.25 1.14 0.60 satt226(10) Tuyen et al (2010)
satt289 C2 112.34 3.93 0.62 0.54 Cho et al (2002) sat_354 D2 93.7 6.24 5.66 2.98 satt226(10) Tuyen et al (2010)
satt296 D1b 52.61 4.02 0.40 0.35 Chen et al (2008) satt263 E 45.4 5.13 1.71 0.90
sat_354 D2 93.7 5.39 3.82 3.32 √(09) satt160 F 33.18 9.66 9.42 4.96
satt452-satt045 E 45.09–46.65 3.50–5.63 0.49–1.36 0.42–1.18 satt138 G 55.99 6.76 1.18 0.62
satt659 F 26.7 5.81 1.56 1.35 sat_372 G 107.75 4.10 6.20 3.27
satt160 F 33.18 8.59 4.09 3.56 satt417 K 46.2 9.64 2.71 1.43
satt309 G 4.53 6.91 2.24 1.95 Cho et al (2002) sct_190 K 77.37 3.81 0.84 0.44
satt270 I 50.11 6.90 0.88 0.77 satt626 M 58.59 3.06 0.87 0.46
sat_228 J 23.91 4.02 0.23 0.20 Chen et al (2008) sat_256 M 74.52 8.91 6.80 3.58
sat_256 M 74.52 5.28 3.80 3.30 satt245(09) Chen et al (2008) satt631 N 26.13 3.01 1.57 0.83
satt250 M 107.69 3.51 0.44 0.39 Chen et al (2008) satt022 N 102.05 3.37 5.70 3.00

: the same associated marker detected by different approaches;

: year, 09:2009; 10: 2010;

: marker in similar result column is linked to the associated marker in this study; LR: Length of main root; FWR: Fresh weight of root; DWR: Dried weight of root; LH; Length of hypocotyl; BS: Biomass.