Table 5.
Selected 14 shRNA hairpin publications highlighting the qualifying criteria for their inclusion in stringent overlap
| Coverage | Format | Study | Published gene lists | # active duplexes | H score application | Raw data availability | BDA hit nomination | Residual gene lists |
|---|---|---|---|---|---|---|---|---|
| GW | shRNA|Arrayed | Bhinder et al. 16 | 1 | Yes | Yes | Yes | Yes | 1 |
|
| ||||||||
| shRNA|Pooled | Cheung et al. 17 | 6 | NP | NP | Yes | Yes | 102 | |
| Luo et al. 12 | 2 | Yes | NP | NP | No | 2 | ||
|
| ||||||||
| FD | shRNA|Arrayed | Barbie et al. 11 | 1 | NP | NP | Yes | Yes | 19 |
| Duan et al. 20 | 1 | NP | NP | NP | No | - | ||
| Giodts et al. 21 | 1 | NP | NP | NP | No | - | ||
| Scholl et al. 10 | 1 | Yes | Yes | NP | No | 1 | ||
| Whitworth et al. 22 | 1 | NP | NP | NP | No | - | ||
| Yang et al. 23 | 1 | NP | NP | NP | No | - | ||
| Yeh et al. 24 | 1 | Yes | NP | NP | No | 1 | ||
|
| ||||||||
| shRNA|Pooled | Luo et al. 25 | 12 | Yes | NP | Yes | Yes | 12 | |
| Ngo et al. 26 | 1 | Yes | NP | NP | No | 1 | ||
| Schlabach et al. 13 | 4 | Yes | Yes | NP | No | 4 | ||
| Silva et al. 27 | 7 | Yes | NP | NP | No | 4 | ||