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. Author manuscript; available in PMC: 2014 Sep 1.
Published in final edited form as: Behav Genet. 2013 Aug 14;43(5):10.1007/s10519-013-9606-x. doi: 10.1007/s10519-013-9606-x

Table 3.

SNPs showing a SNP by Generation interaction effect at p < E-03 for at least two clinical phenotypes.

rs10037670 rs2380220 rs2380222 rs7968335

CHR 5q33.2 6q16.1 6q16.1 12q21.31

Base Position (Build 37.3) 153,791,683 96,074,133 96,082,116 83,748,272

SNP Class Flanking 3’ UTR Intergenic Intergenic Flanking 3’ UTR

Gene GALNT10 SLC6a15

Minor Allele G A G A

MAF .208 .159 .160 .410

Alcohol Consumption
 Interaction p value 2.9E-03 4.3E-05 5.2E-05 6.5E-04
 Parent Beta -0.894 -1.179 -1.207 0.233
 Parent Beta p 2.7E-02 8.1E-03 6.6E-03 4.8E-01
 Offspring Beta 2.005 3.227 3.143 -2.484
 Offspring Beta p 3.0E-02 1.6E-03 2.1E-03 1.1E-03

Alcohol Dependence
 Interaction p value 4.3E-03 4.4E-06 5.0E-06 7.3E-06
 Parent Beta -0.184 -0.249 -0.255 0.196
 Parent Beta p 4.1E-02 1.2E-02 9.5E-03 7.2E-03
 Offspring Beta 0.164 0.370 0.359 -0.251
 Offspring Beta p 6.8E-02 3.2E-04 3.2E-04 6.9E-04

Illicit Drugs
 Interaction p value 3.8E-06 3.7E-04 3.0E-04 1.0E-01
 Parent Beta -5.250 -3.737 -3.830 1.381
 Parent Beta p 6.6E-03 8.0E-02 7.2E-02 3.8E-01
 Offspring Beta 8.206 7.767 7.782 -2.499
 Offspring Beta p 5.2E-04 3.1E-03 2.8E-03 2.0E-01

Nicotine
 Interaction p value 3.5E-04 4.6E-04 2.5E-04 2.0E-01
 Parent Beta -2.089 -2.445 -2.722 1.3E-02
 Parent Beta p 1.8E-01 1.6E-01 1.2E-01 0.613
 Offspring Beta 5.217 5.473 5.525 6.3E-01
 Offspring Beta p 3.9E-04 7.7E-04 6.6E-04 -3.551

Behavioral Disinhibition 5.7E-05 3.6E-04 3.3E-04 1.9E-04
 Interaction p value -0.397 -0.613 -0.638 0.479
 Parent Beta 1.6E-01 4.7E-02 3.8E-02 3.6E-02
 Parent Beta p 1.601 1.349 1.330 -1.040
 Offspring Beta 3.6E-04 6.7E-03 7.4E-03 4.8E-03
 Offspring Beta p