Table 1.
Glycine Betaine Δμ23,4/RT and m-Values with RNA Duplex Dodecamers During Thermal Denaturation
| sequence | %GC | T/°Ca | Δμ23,4/RT/m−1b | m-value/kcal mol−1 m−1b | d(m-value)/dT/kcal mol−1 m−1 K−1 | dΔHobso/dm3/kcal mol−1 m−1 |
|---|---|---|---|---|---|---|
| 5′-r(GAAAUUAUAAAG)-3′ | 17 | 27.3 | −0.315 ± 0.029 | −0.188 ± 0.017 | −0.0044 ± 0.0003 | 1.12 ± 0.09 |
| 5′-r(GAAAGUAUAAAG)-3′ | 25 | 34.8 | −0.398 ± 0.044 | −0.244 ± 0.027 | −0.0065 ± 0.0002 | 1.76 ± 0.05 |
| 5′-r(GAUAGUAGAUAG)-3′ | 33 | 45.5 | −0.598 ± 0.027 | −0.378 ± 0.017 | −0.0191 ± 0.0012 | 4.03 ± 0.18 |
| 5′-r(GAAAGUAGAAAC)-3′ | 33 | 40.4 | −0.418 ± 0.036 | −0.260 ± 0.022 | −0.0139 ± 0.0006 | 5.71 ± 0.39 |
| 5′-r(GCAAAGUAAACG)-3′ | 42 | 44.6 | −0.670 ± 0.069 | −0.423 ± 0.044 | −0.0142 ± 0.0009 | 4.22 ± 0.28 |
| 5′-r(GCAAAGCAAACG)-3′ | 50 | 49.0 | −1.02 ± 0.07 | −0.655 ± 0.045 | −0.0195 ± 0.0004 | 5.61 ± 0.12 |
| 5′-r(GCAUAGCAUACG)-3′ | 50 | 52.0 | −0.811 ± 0.032 | −0.524 ± 0.020 | −0.0188 ± 0.0004 | 5.63 ± 0.15 |
| 5′-r(GCGAAGCCAACG)-3′ | 67 | 59.6 | −0.948 ± 0.037 | −0.627 ± 0.024 | −0.0266 ± 0.0021 | 8.41 ± 0.69 |
| 5′-r(GCGCCGCCGGCG)-3′ | 100 | 80.9 | −1.44 ± 0.03 | −1.010 ± 0.023 | −0.0405 ± 0.0031 | 12.9 ± 1.1 |
Reference temperatures for RNA duplex unfolding during thermal denaturation determined at the temperature where the fraction of unfolded duplex total strand was 0.2 in 0 m glycine betaine.
Determined at reference temperature.