Table 3.
Different types of repeat elements in the 511 Mb of pigeonpea genome sequence
| Repeat category | Number of elements | Sequence length (bp) | Percent of repeats |
|---|---|---|---|
| 1. Interspersed repeats | |||
| 1.1 Class I (Retro transposons) | 127,602 | 77,096,057 | 23.59 |
| LINE-L1 | 5,239 | 2,270,477 | 0.69 |
| LINE-R1 | 1,277 | 784,129 | 0.24 |
| LINE-RTE-BovB | 2,087 | 333,215 | 0.10 |
| LTR | 186 | 39,775 | 0.01 |
| LTR-Caulimovirus | 2,508 | 1,376,233 | 0.42 |
| LTR-Copia | 40,373 | 19,937,308 | 6.10 |
| LTR-Gypsy | 75,932 | 52,354,920 | 16.02 |
| 1.2 Class II (DNA transposons) | 21,212 | 9,772,250 | 2.99 |
| En-spm | 5,166 | 2,339,643 | 0.71 |
| Harbinger | 1,348 | 467,230 | 0.14 |
| hat-AC | 6,572 | 4,059,651 | 1.24 |
| hat-Tag1 | 1,806 | 586,556 | 0.17 |
| hat-Tip100 | 934 | 337,903 | 0.10 |
| MuDR | 4,980 | 1,830,967 | 0.56 |
| TcMAR-Pogo | 153 | 43,654 | 0.01 |
| RC/Hiltron | 253 | 106,646 | 0.03 |
| 1.3 Unclassified | 623,425 | 216,262,607 | 66.20 |
| 2. Simple repeats | 72,522 | 8,405,304 | 2.57 |
| 3. Low complexityrepeats | 282,968 | 15,134,850 | 4.63 |
| Total | 1,127,729 | 326,671,068 | 99.98 |