Table 3.
Repeat category | Number of elements | Sequence length (bp) | Percent of repeats |
---|---|---|---|
1. Interspersed repeats | |||
1.1 Class I (Retro transposons) | 127,602 | 77,096,057 | 23.59 |
LINE-L1 | 5,239 | 2,270,477 | 0.69 |
LINE-R1 | 1,277 | 784,129 | 0.24 |
LINE-RTE-BovB | 2,087 | 333,215 | 0.10 |
LTR | 186 | 39,775 | 0.01 |
LTR-Caulimovirus | 2,508 | 1,376,233 | 0.42 |
LTR-Copia | 40,373 | 19,937,308 | 6.10 |
LTR-Gypsy | 75,932 | 52,354,920 | 16.02 |
1.2 Class II (DNA transposons) | 21,212 | 9,772,250 | 2.99 |
En-spm | 5,166 | 2,339,643 | 0.71 |
Harbinger | 1,348 | 467,230 | 0.14 |
hat-AC | 6,572 | 4,059,651 | 1.24 |
hat-Tag1 | 1,806 | 586,556 | 0.17 |
hat-Tip100 | 934 | 337,903 | 0.10 |
MuDR | 4,980 | 1,830,967 | 0.56 |
TcMAR-Pogo | 153 | 43,654 | 0.01 |
RC/Hiltron | 253 | 106,646 | 0.03 |
1.3 Unclassified | 623,425 | 216,262,607 | 66.20 |
2. Simple repeats | 72,522 | 8,405,304 | 2.57 |
3. Low complexityrepeats | 282,968 | 15,134,850 | 4.63 |
Total | 1,127,729 | 326,671,068 | 99.98 |