Table 5.
Descriptions of Orientia tsutsugamushi isolates and reference genotypes used in this study
| Isolate | Source | Country | Accession no. |
|---|---|---|---|
| CB19 | Rattus rattus | Thailand | GU068058 |
| CB62 | Bandicota indica | Thailand | GU068055 |
| FPW2016 | Human | Thailand | EF213085 |
| Gilliam | Human | Japan | DQ485289 |
| Hirahata | Leptotrombidium pallidum | Taiwan | AF201835 |
| Je-cheon | Human | Taiwan | AF430143 |
| Karp | Human | Taiwan | AY956315 |
| Kato | Human | Japan | AY836148 |
| Kawasaki | Human | Japan | M63383 |
| Kuroki | – | Japan | M63380 |
| LA-1 | Leptotrombidium arenicola | Japan | AF173049 |
| LF-1 | – | Japan | AF173050 |
| Shimokoshi | – | Thailand | M63381 |
| TA678 | Rattus rattus | Thailand | U19904 |
| TA686 | Tupaia glis | Thailand | U80635 |
| TA716 | Menetes berdmorei | Thailand | U19905 |
| TA763 | Rattus rajah | Taiwan | U80636 |
| Taitung-4 | – | Taiwan | AY787232 |
| TW45R | Rattus losea | Taiwan | AY222632 |
| TW461 | Rattus rattus | Taiwan | AY222631 |
| TWyu81 | Leptotrombidium pallidum | Thailand | AY222640 |
| UT76 | Human | Thailand | EF213078 |
| UT125 | Human | Thailand | EF213096 |
| UT144 | Human | Thailand | EF213091 |
| UT167 | Human | Thailand | EF213080 |
| UT176 | Human | Thailand | EF213081 |
| UT177 | Human | Thailand | EF213084 |
| UT196 | Human | Thailand | EF213079 |
| UT219 | Human | Thailand | EF213100 |
| UT302 | Human | Thailand | EF213095 |
| UT332 | Human | Thailand | EF213083 |
| Yeojoo | Human | South Korea | AF430144 |
| Yonchon | – | South Korea | U19903 |
| Young-world | Human | South Korea | AF430141 |