Table 1. Genomic features of the Nannochloropsis genomes.
Microalgae | N. oceanica IMET1 | N. oceanica CCMP531 | N. granulate CCMP529 | N. oculata CCMP525 | N. salina CCMP537 | N. gaditana CCMP526* |
Whole genome | ||||||
Assembly size (Mb) | 30.1 | 35.5 | 30.1 | 34.5 | 26.9 | 29.0 |
G+C content (%) | 53.7 | 53.8 | 54.6 | 54.2 | 54.2 | 54.2 |
Predicted gene number | 9,915 | 7,268 | 8,060 | 7,254 | 6,562 | 8,738 |
Genes having blast hits in NCBI NR database | 6,853 | 3,584 | 4,014 | 3,557 | 3,789 | 5,467 |
Genes with functional annotation | 5,121 | 2,528 | 2,798 | 3,321 | 1,378 | 3,704 |
Predicted tRNA number | 80 | 79 | 85 | 82 | 85 | 85 |
Predicted LTR number | 26 | 24 | 6 | 25 | 4 | 33 |
LTR length (Kbp) | 24.3 | 9.4 | 2.3 | 25.6 | 3.4 | 41.8 |
Mitochondrial genome | ||||||
Size (bases) | 38,057 | 38,057 | 38,791 | 38,444 | 41, 907 | 38,981 |
G+C content (%) | 31.9 | 31.9 | 32.0 | 31.8 | 31.4 | 31.4 |
Predicted gene number | 35 | 35 | 35 | 35 | 36 | 35 |
Predicted tRNA number | 28 | 28 | 28 | 28 | 28 | 26 |
Chloroplast genome | ||||||
Size (bases) | 117,548 | 117,634 | 117,672 | 117,463 | 114,883 | 114,937 |
G+C content (%) | 33.6 | 33.6 | 33.4 | 33.4 | 33.1 | 33.0 |
Predicted gene number | 126 | 126 | 126 | 126 | 123 | 122 |
Predicted tRNA number | 34 | 34 | 34 | 34 | 33 | 28 |
, data cited from the genome paper of N. gaditana CCMP526 [5].