Table 1. Equilibrium dissociation constants (KD) for binding of NNIs to Δ21 and fold-shifts in KD for association to Δ55 and Δ21-Δ8 determined by SPR.
KD (nM)a | Fold shift from Δ21b | |||
Site | Inhibitor | Δ21 | Δ55 | Δ21-Δ8 |
Thumb site I | B | 11.7 | 1.0 | 1.6 |
Thumb site II | GS-9669 | 1.6 | 5.5 | 1.7 |
Thumb site II | Lomibuvir | 3.3 | 9.0 | 2.0 |
Thumb site II | Filibuvir | 38.2 | 9.3 | 2.4 |
Palm site I | A-837093 | 0.04 | 433 | n/ac |
Palm site II | HCV-796 | 174.0 | n/ac | n/ac |
a Sensorgrams for the binding of NNIs to Δ21, Δ55 and Δ21-Δ8 along with a table of equilibrium and kinetic parameters of interaction are shown in Figure S2 and Table S1 in File S1, respectively.
b Fold shift in KD for association of NNIs to Δ55 and Δ21-Δ8 was calculated relative to the KD determined for binding towards Δ21.
c Where KD values could not be obtained either due to complex binding kinetics (Palm Site II inhibitor binding to Δ55 and Δ21-Δ8) or super-stoichiometric binding (Palm Site I inhibitor binding to Δ21-Δ8), numerical values have been replaced by n/a (not applicable).