|
Trimming and Filtering
|
| No. of Reads (Raw) |
Total Base Pairs (Raw) |
No. of Reads (Trimmed and Filtered) |
Total Base Pairs (Trimmed and Filtered) |
| ∼1.24×109
|
∼125×109
|
∼1.18×109
|
∼117×109
|
|
Mapping
|
| No. of Mapped High Quality Reads |
Total Base Pairs Mapped |
No. of Unmapped High Quality Reads |
Total Base Pairs Unmapped |
| ∼1.13×109
|
∼112×109
|
∼50×106
|
∼5×109
|
|
Assembly of Unmapped Reads
|
| No. of Contigs |
Total Length of the Assembly (bp) |
Min.–Max.–Mean Contig Length (bp) |
N50 (bp) |
| 11,654 |
9,987,256 |
100–43,190–856 |
1,378 |
|
Homology Search
|
| Contigs Without a Hit |
Total Length of Unhit Contigs (bp) |
Min.–Max.–Mean Unhit Contig Length |
N50 of Unhit Contigs (bp) |
| 2,168 (19%) |
927,213 |
100–9,345–427 |
469 |
| Contigs With a Hit |
Reference Genome |
Alternate Assemblies |
Other Human Sequences |
Non-human primates |
Other |
| 9,486 (81%) |
983 (8.5%) |
7,814 (67.0%) |
376 (3.2%) |
218 (1.9%) |
95 (0.8%) |
