Table 1. Sl-ARF gene family in tomato.
| Generic namea | Aliasb | CDS lengthc | Str | Chr | Domainsd | Name in Wu et al.e | improvementf | New locationg |
| Sl-ARF1 | Solyc01g103050 | 1965 | + | 1 | B3,ARF,AUX/IAA,SPL-Rich RD | SlARF1(HM061154.1) | - | |
| Sl-ARF2A | Solyc03g118290 | 2541 | + | 3 | B3,ARF,AUX/IAA,SPL-Rich RD | SlARF2(DQ340255.1) | - | |
| Sl-ARF2B | Solyc12g042070 | 2490 | - | 12 | B3,ARF,AUX/IAA,SPL-Rich RD | SlARF11(HM143940.1) | 5′, 3′ UTR | 42538600..42544937 |
| Sl-ARF3 | Solyc02g077560 | 2244 | + | 2 | B3,ARF,SL/G-Rich RD | SlARF3(DQ340254.1) | - | |
| Sl-ARF4 | Solyc11g069190 | 2436 | - | 11 | B3,ARF,AUX/IAA,SPL-Rich RD | SlARF4(DQ340259.1) | 5′, 3′ UTR | 50900912..50910023 |
| Sl-ARF5 | Solyc04g081240 | 2793 | - | 4 | B3,ARF,AUX/IAA,QSL-Rich AD | SlARF5(HM195248.1) | - | |
| Sl-ARF6A | Solyc12g006340(Nter);Solyc00g196060(Cter) | 2643 | −/+ | 12/0 | B3,ARF,AUX/IAA,QSL-Rich AD | SlARF6(HM594684.1) | 5′ UTR, CDS | 857256..859656(Nter) |
| Sl-ARF6B | Solyc07g043620 | 2673 | - | 7 | B3,ARF,QSL-Rich AD | SlARF6-1(NM_001247611.1) | 5′UTR | 54884781..54890560 |
| Sl-ARF7A | Solyc07g016180 | 3339 | - | 7 | B3,ARF,AUX/IAA,QSL-Rich AD | SlARF19(HM130544.1) | - | |
| Sl-ARF7B | Solyc05g047460 | 3294 | - | 5 | B3,ARF,AUX/IAA,QSL-Rich AD | SlARF19-1(HM565130.1) | 5′UTR | 58050744..58057040 |
| Sl-ARF8A | Solyc03g031970 | 2535 | + | 3 | B3,ARF,AUX/IAA,QSL-Rich AD | SlARF8-1(HM560979.1) | 5′UTR | 8739535..8747501 |
| Sl-ARF8B | Solyc02g037530 | 2529 | + | 2 | B3,ARF,AUX/IAA,QSL-Rich AD | SlARF8(EF66734F2.1) | 5′UTR | 21756022..21766699 |
| Sl-ARF9A | Solyc08g082630 | 1977 | + | 8 | B3,ARF,AUX/IAA,SPL-Rich RD | SlARF9(HM037250.1) | 5′UTR | 62527409..62531812 |
| Sl-ARF9B | Solyc08g008380 | 2052 | + | 8 | B3,ARF,AUX/IAA,SPL-Rich RD | SlARF12(HM565127.1) | 5′UTR | 2807931..2812983 |
| Sl-ARF10A | Solyc11g069500 | 2100 | - | 11 | B3,ARF,AUX/IAA,SL/G-Rich RD | SlARF10(HM143941.1) | 5′, 3′ UTR | 51188434..51192539 |
| Sl-ARF10B | Solyc06g075150 | 2016 | + | 6 | B3,ARF,AUX/IAA,SL/G-Rich RD | SlARF16(HM195247.1) | 3′ UTR | 43020594..43023604 |
| Sl-ARF24 | Solyc05g056040 | 1953 | - | 5 | B3,ARF,SPL-Rich RD | SlARF13(HM565128.1); SlARF13-1(HM565129.1) | - | |
| Sl-ARF16A | Solyc09g007810 | 2085 | - | 9 | B3,ARF,AUX/IAA,SL/G-Rich RD | No | 3′ UTR | 1332230..1335760 |
| Sl-ARF16B | Solyc10g086130 | 1896 | - | 10 | B3,ARF,SL/G-Rich RD | SlARF16(NM_001247861.1) | - | |
| Sl-ARF17 | Solyc11g013480(Nter);Solyc11g013470(Cter) | 1869 | - | 11 | B3,ARF,SL/G-Rich RD | SlARF17(HQ456923) | 3′ UTR, CDS | 6495469..6511349 |
| Sl-ARF18 | Solyc01g096070 | 2058 | + | 1 | ARF,AUX/IAA,SPL-Rich RD | No | 5′UTR | 78941268..78946012 |
| Sl-ARF19 | Solyc07g042260 | 3357 | - | 7 | B3,ARF,AUX/IAA,QSL-Rich AD | SlARF7(EF121545.1) | - |
a Sl-ARF gene names
b the alias of each ARF gene in iTAG2.30 genome annotation
c Length of the corresponding Coding Sequence (CDS) in base pairs.
d Conserved Domains found in PFAM database: B3 means DNA binding domain, ARF means Auxin response Factor conserved domain, AUX/IAA means AUX/IAA dimerization domain, AD means transcriptional activation domain, RD means transcriptional repression domain.
e Corresponding names in Wu et al.; accession numbers are in the parentheses.
f Gene Model modification type: UTR means that the UTR sequence have been identified and annotated, CDS means that the the coding sequence have been corrected.
g New locations in the tomato genome version Sl2.40 taking into account the manual curation of the previous gene annotation in iTAG2.30