Table 3. Genetic diversity observed per locus in Phytophthora plurivora isolates from Europe and the US.
gene | Taj D | p Taj D | no. seqs | no. HT | no. sites | no. poly | π | θ seq | k | Rm |
cox I | –1.81 | >0.1 | 33 | 6 | 1083 | 6 | 0.0009 | 1.46 | 1.01 | 0 |
btub | –1.60 | >0.1 | 32 | 4 | 1058 | 4 | 0.0003 | 0.99 | 0.36 | 0 |
enolase | –1.13 | >0.1 | 36 | 2 | 1125 | 1 | 0.0001 | 0.24 | 0.05 | 0 |
HSP90 | –0.97 | >0.1 | 36 | 6 | 1528 | 8 | 0.0008 | 1.92 | 1.25 | 1 |
ITS | –1.68 | >0.1 | 37 | 5 | 690 | 5 | 0.0006 | 1.19 | 0.42 | 0 |
TigA | 0.29 | >0.1 | 33 | 7 | 1497 | 11 | 0.0020 | 2.69 | 2.94 | 2 |
trp1 | –1.51 | >0.1 | 28 | 3 | 492 | 2 | 0.0003 | 0.51 | 0.14 | 0 |
Abbreviations are as follows: Taj D (Tajima’s D), p Taj D (p value Tajima’s D), no. seqs (number of sequences), no. HT (number of haplotypes), no. sites (number of sites), no. poly (number of polymorphic sites), π (pi; nucleotide diversity), θ seq (theta, per sequence), k (average number of nucleotide differences), Rm (minimum number of recombination events).