Skip to main content
. 2014 Jan 10;9(1):e85368. doi: 10.1371/journal.pone.0085368

Table 3. Genetic diversity observed per locus in Phytophthora plurivora isolates from Europe and the US.

gene Taj D p Taj D no. seqs no. HT no. sites no. poly π θ seq k Rm
cox I –1.81 >0.1 33 6 1083 6 0.0009 1.46 1.01 0
btub –1.60 >0.1 32 4 1058 4 0.0003 0.99 0.36 0
enolase –1.13 >0.1 36 2 1125 1 0.0001 0.24 0.05 0
HSP90 –0.97 >0.1 36 6 1528 8 0.0008 1.92 1.25 1
ITS –1.68 >0.1 37 5 690 5 0.0006 1.19 0.42 0
TigA 0.29 >0.1 33 7 1497 11 0.0020 2.69 2.94 2
trp1 –1.51 >0.1 28 3 492 2 0.0003 0.51 0.14 0

Abbreviations are as follows: Taj D (Tajima’s D), p Taj D (p value Tajima’s D), no. seqs (number of sequences), no. HT (number of haplotypes), no. sites (number of sites), no. poly (number of polymorphic sites), π (pi; nucleotide diversity), θ seq (theta, per sequence), k (average number of nucleotide differences), Rm (minimum number of recombination events).