Table 1.
The 20 most highly upregulated genes in L. reuteri 6475 in stationary phase compared to gene expression in mid-exponential phasea
| Microarray identifier | Locus tag | Gene name | Corrected P value | Fold upregulated |
|---|---|---|---|---|
| NT01LR0789 | HMPREF0536_11158 | Conserved hypothetical protein | 4.83E−04 | 34.60 |
| NT01LR0977 | HMPREF0536_10683 | Conserved hypothetical protein (rsiR) | 3.54E−05 | 32.20 |
| NT01LR1511 | HMPREF0536_10555 | Dihydrofolate:folylpolyglutamate synthetase | 3.61E−04 | 26.96 |
| NT01LR0625 | HMPREF0536_10297 | Conserved hypothetical protein | 3.15E−04 | 26.30 |
| NT01LR1631 | HMPREF0536_11291 | Aldo/keto reductase family oxidoreductase | 1.53E−04 | 25.27 |
| NT01LR1311 | HMPREF0536_11270 | Hypothetical protein | 3.29E−04 | 24.36 |
| NT01LR1510 | HMPREF0536_10556 | DNA repair protein (radC) | 9.78E−05 | 23.53 |
| NT01LR1386 | HMPREF0536_10299 | Conserved hypothetical protein | 1.85E−03 | 22.62 |
| xth_1 | HMPREF0536_11294 | Exodeoxy-RNase III | 1.36E−04 | 20.93 |
| cbiD | HMPREF0536_11708 | Cobalamin biosynthesis protein (cbiD) | 4.26E−04 | 19.02 |
| cobD | HMPREF0536_11710 | Cobalamin biosynthesis protein (cobD) | 5.33E−04 | 18.09 |
| NT01LR1337 | HMPREF0536_11674 | Amino acid permease | 9.78E−05 | 16.65 |
| NT01LR1312 | HMPREF0536_11269 | LacI family sugar-binding transcriptional regulator | 9.78E−05 | 16.41 |
| NT01LR0974 | HMPREF0536_10863 | Phage antirepressor protein | 3.71E−04 | 16.21 |
| NT01LR1675 | HMPREF0536_10858 | Hypothetical protein | 1.48E−04 | 16.21 |
| NT01LR1937 | HMPREF0536_10005 | Competence CoiA family protein | 1.05E−04 | 14.94 |
| NT01LR1936 | HMPREF0536_10006 | Dipeptidase A | 9.78E−05 | 14.68 |
| NT01LR1346 | HMPREF0536_11683 | Conserved hypothetical protein | 1.13E−03 | 14.54 |
| NT01LR1336 | HMPREF0536_11673 | Alpha/beta fold family hydrolase | 9.78E−05 | 14.42 |
| NT01LR1345 | HMPREF0536_11682 | Hypothetical protein | 1.01E−04 | 14.11 |
a
These data represent microarray comparisons of a previously published study (35).