Table 2.
Overall nucleotide diversity and rates of nonsynonymous and synonymous mutations in mrkD from K. pneumoniae and E. coli isolates
| Species and/or clade | No. of isolates | No. of hot spot residues | No. of alleles in: |
π/nucleotide | dN | dS | dN/dS | Z-test P value | |
|---|---|---|---|---|---|---|---|---|---|
| Primary zone | External zone | ||||||||
| All isolates | 100 | 7 | 30 | 12 | 0.037 | 0.009 | 0.142 | 0.06 | <0.0001 |
| K. pneumoniae | 86 | 4 | 30 | 6 | 0.040 | 0.008 | 0.159 | 0.05 | <0.0001 |
| E. coli | 14 | 6 | 3 | 7 | 0.008 | 0.009 | 0.007 | 1.29 | 0.579 |
| Within clade 1 | 84 | 7 | 20 | 11 | 0.006 | 0.004 | 0.010 | 0.40 | 0.007 |
| Within clade 2 | 5 | 1 | 4 | 0 | 0.006 | 0 | 0.023 | 0 | |
| Within clade 3 | 11 | 1 | 6 | 1 | 0.006 | 0.001 | 0.021 | 0.05 | 0.001 |
| Clade 1 | |||||||||
| E. coli | 14 | 6 | 3 | 7 | 0.008 | 0.009 | 0.007 | 1.29 | 0.579 |
| K. pneumoniae | 70 | 3 | 20 | 5 | 0.005 | 0.002 | 0.011 | 0.16 | 0.004 |