Table 4.
Gene name and sample no. | DRMa | % variants | Predicted drug resistance pattern | Original genotypeb | Resistance phenotypec | Source or reference |
---|---|---|---|---|---|---|
UL54 | ||||||
OHSU-E65 | G841A | 88.3 | GCVr CDVr FOSr | G841A | GCVr, FOSi, CDVnd | 28 |
P522A | 90.0 | GCVr CDVr | P522A | |||
L501I | 5.7 | GCVr CDVr | Not detected | |||
OHSU-E724 | L802M | 69.1 | FOSr (low-level GCVr CDVr) | L802 M | GCVr, FOSr, CDVr | 29 |
F412C | 94.0 | GCVr CDVr | F412C | |||
D588N | 10.5 | FOSr (low-level GCVr CDVr) | Not detected | |||
OHSU-E749 | P522S | 87.6 | GCVr CDVr | P522S | GCVr, FOSi, CDVnd | 30 |
P522A | 8.6 | GCVr CDVr | Not detected | |||
OHSU-E1178 | A987G | 99.6 | GCVr CDVr | A987G | GCVr, FOSnd, CDVnd | 27 |
A834P | 97.4 | GCVr CDVr FOSr | A834P | |||
UL97 | ||||||
OHSU-E65 | M460V | 100.0 | GCVr | M460V | GCVr | 28 |
OHSU-E724 | C603W | 93.9 | GCVr | C603W | GCVr | 29 |
OHSU-E749 | C607F | 97.3 | GCVr | C607F | GCVr | 30 |
OHSU-E1145 | C603W | 99.7 | GCVr | C603W | No culture isolated | S. Choue |
OHSU-E1162 | L595S | 56.7 | GCVr | L595S mix | No culture isolated | S. Choue |
A594V | 15.1 | GCVr | A594V possible mix | |||
OHSU-E1369 | C603W | 94.2 | GCVr | C603W | No culture isolated | S. Choue |
OHSU-E1178 | L595S | 94.4 | GCVr | L595S | GCVr | 27 |
DRM, drug resistance mutation.
Predicted amino acid change determined by conventional Sanger sequencing.
Result of plaque reduction testing of original culture isolate. r, resistant; i, intermediate; nd, not done.
Genotypic testing done on plasma specimen without accompanying culture.
Unpublished.