Table 1. Analysis of deep sequencing libraries generated in this study.
| SOMA | |||||
| Library | β-eliminated | Total no of insert11–28 nt | Insertsmatchingthe genome(% of total) | InsertsmatchingmiRNAs(% of genomematching) | Insertsmatchingtransposons(% of genomematching) |
| loqs-D/+ | – | 9546079 | 7082781 (74.2) | 3421132 (48.3) | 36408 (0.5) |
| loqs-D/+ | + | 3682719 | 2253071 (61.2) | 464462 (20.6) | 114366 (5.1) |
| loqs-D/loqs-D | – | 22704677 | 18806689 (82.8) | 10946243 (58.2) | 80909 (0.4) |
| loqs-D/loqs-D | + | 3103232 | 1348791 (43.5) | 415769 (30.8) | 73543 (5.5) |
| r2d21/+ | – | 20954822 | 15961906 (76.2) | 7213032 (45.2) | 118789 (0.7) |
| r2d21/+ | + | 4906737 | 2444080 (49.8) | 568163 (23.2) | 438137 (17.9) |
| r2d21/ r2d21 | – | 4333692 | 2857262 (65.9) | 1205092 (42.2) | 30200 (1.1) |
| r2d21/ r2d21 | + | 3401343 | 1038959 (30.5) | 273550 (26.3) | 64192 (6.2) |
| GERMLINE | |||||
| loqs-D/+ | – | 14512820 | 10955066 (75.5) | 2331242 (21.3) | 2626560 (24.0) |
| loqs-D/+ | + | 14167951 | 10343590 (73.0) | 65066 (0.6) | 4955844 (47.9) |
| loqs-D/loqs-D | – | 12343141 | 10107095 (81.9) | 1288227 (12.7) | 3342406 (33.1) |
| loqs-D/loqs-D | + | 14963584 | 10910993 (72.9) | 75443 (0.7) | 4680467 (42.9) |
| r2d21/+ | – | 13982564 | 10624983 (76.0) | 1805164 (17.0) | 3076304 (29.0) |
| r2d21/+ | + | 5385640 | 4164837 (77.3) | 25137 (0.6) | 2012986 (48.3) |
| r2d21/ r2d21 | – | 5715078 | 3617578 (63.3) | 548556 (15.2) | 1125305 (31.1) |
| r2d21/ r2d21 | + | 6797261 | 5149557 (75.8) | 15401 (0.3) | 2244828 (43.6) |