Table 5.
Substitution models
| Gene | Model | Ti/Tv | A > C | A > G | A > T | C > G | C > T | G > T | α | I | % A | % C | % G | % T |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12SrDNA |
GTR+I |
|
0.33 |
7.03 |
3.01 |
0 |
11.93 |
1 |
Equal |
0.62 |
41.7 |
8.7 |
14.5 |
35.1 |
| COII |
TRN+G |
|
1 |
5.75 |
1 |
1 |
8.95 |
1 |
0.26 |
0 |
37.8 |
17.9 |
7.9 |
36.4 |
| D-loop |
HKY+I+G |
1.04 |
|
|
|
|
|
|
1.07 |
0.57 |
30.9 |
13.9 |
13.0 |
42.2 |
| ITS2 |
GTR+I |
|
1.3 |
5.05 |
1.32 |
0.22 |
0.88 |
1 |
Equal |
0.56 |
14.7 |
37.9 |
28.9 |
18.5 |
| mtDNA |
GTR+G |
|
0.76 |
4.29 |
1.53 |
0.57 |
7.58 |
1 |
0.21 |
0 |
37.0 |
13.8 |
11.4 |
37.8 |
| n+mtDNA | TVM+I+G | 1 | 4.76 | 2.88 | 0.43 | 4.76 | 1 | 1.03 | 0.49 | 27.6 | 24.0 | 18.2 | 30.2 |
Substitution models selected by the Akaike Information Criterion in Modeltest for each dataset, with substitution matrices (x >y indicating mutation from nucleotide x to nucleotide y), Ti/Tv = transition/transversion rates, α = shape of gamma distribution, I = proportion of invariable sites, and base frequencies (A, C, G, T) in percentage. GTR + I = General Time Reversible + Invariable model; GTR + Gamma = General Time Reversible + Gamma model; TRN + G = Tamura Nei + Gamma model; HKY + I + G = Hasegawa-Kishino-Yano + Invariable + Gamma model; TVM + I + G = Transition Model + Invariable + Gamma model.