Table 1.
Conservation level of snRNAs in T. rubrum and related dermatophytes
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Genome location |
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|---|---|---|---|---|---|---|---|---|
| Name | Genes | Len a | Chromosome | Start | End | Position | Conserved in dermatophytes (% sequence identity) | Accession |
| Trnc_3904 |
U1 |
196 |
supercont2.8 |
159538 |
159733 |
5′UTR |
M. gypseum (98%), M. canis (98%), A. benhamiae (100%) |
KC353306 |
| Trnc_774 |
U2 |
201 |
supercont2.1 |
3545014 |
3545214 |
3′UTR |
T. tonsurans (98%), T. equinum (98%), M. gypseum (97%), T. verrucosum (99%), M. canis (96%), A. benhamiae (99%) |
KC353051 |
| Trnc_1437 |
U4 |
264 |
supercont2.17 |
13253 |
15593 |
Intergenic |
T. tonsurans (100%), T. equinum (100%), M. gypseum (99%), A. benhamiae (100%) |
KC353100 |
| Trnc_681 |
U5 |
211 |
supercont2.1 |
3061687 |
3061897 |
5′UTR |
T. tonsurans (92%), T. equinum (92%), M. gypseum (95%), T. verrucosum (93%), M. canis (91%), A. benhamiae (100%) |
KC353044 |
| Trnc_1782 | U6 | 104 | supercont2.2 | 1801544 | 1801647 | 3′UTR | T. tonsurans (100%), M. gypseum (100%), M. canis (99%), A. benhamiae (100%) | KC353131 |
Lena: the cDNA length of the snRNA. Conserved in dermatophytes (% sequence identity): the sequence identity of homologous snRNAs in other dermatophytes compared to T. rubrum; Accession is the accession number in GenBank.