Table 4.
The ncRNA candidates specifically expressed in T. rubrum
| |
|
|
|
Genome location |
|
|||
|---|---|---|---|---|---|---|---|---|
| Name | Class | Reads | Len a | Supercontig | Start | End | Position | Accession |
| Trnc_20 |
|
1 |
94 |
supercont2.1 |
48466 |
48559 |
3′UTR |
KC353103 |
| Trnc_1456 |
|
1 |
94 |
supercont2.18 |
53193 |
53100 |
3′UTR |
KC353000 |
| Trnc_2606 |
snoRNA;H/ACA-box |
2 |
280 |
supercont2.36 |
2106 |
2385 |
Intergenic |
KC353202 |
| Trnc_2609 |
|
4 |
255 |
supercont2.36 |
4048 |
4302 |
Intergenic |
KC353203 |
| Trnc_2621 |
snoRNA;H/ACA-box |
97 |
406 |
supercont2.36 |
8934 |
9339 |
Intergenic |
KC353206 |
| Trnc_2633 |
|
297 |
597 |
supercont2.36 |
17132 |
17728 |
Intergenic |
KC353209 |
| Trnc_2636 |
snoRNA;H/ACA-box |
1 |
203 |
supercont2.36 |
19276 |
19478 |
Intergenic |
KC353210 |
| Trnc_2640 |
|
2 |
71 |
supercont2.36 |
21309 |
21379 |
Intergenic |
KC353211 |
| Trnc_2649 |
|
2 |
79 |
supercont2.36 |
23976 |
24054 |
Intergenic |
KC353212 |
| Trnc_3096 | 1 | 201 | supercont2.4 | 2153644 | 2153444 | 3′UTR | KC353244 | |
Lena: the cDNA length of the ncRNAs; Accession is the accession number in GenBank. This table shows the lengths and genomic loci of ten ncRNAs that might be specifically expressed in T. rubrum. These ncRNAs have no hits assigned to the NCBI NT database using BLASTn.