Table 1.
Summary of the genetic linkage maps of orange-spotted grouper
| Linkage group |
Number of SNPs |
Number of unique loci |
Linkage group size (cM) |
Recombination rates (famale:male) |
cM/SNPs |
cM/loci |
||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sex-averaged | Female | Male | Sex-averaged | Female | Male | Sex-averaged | Female | Male | Sex-averaged | Female | Male | Sex-averaged | Female | Male | ||
| LG1 |
198 |
92 |
121 |
122 |
72 |
87 |
73.5 |
56.3 |
61.7 |
0.91 |
0.37 |
0.61 |
0.51 |
0.60 |
0.78 |
0.71 |
| LG2 |
205 |
116 |
121 |
133 |
88 |
86 |
54.5 |
57.5 |
50.8 |
1.13 |
0.27 |
0.50 |
0.42 |
0.41 |
0.65 |
0.59 |
| LG3 |
122 |
54 |
104 |
77 |
34 |
75 |
65.3 |
57.0 |
54.9 |
1.04 |
0.54 |
1.06 |
0.53 |
0.85 |
1.68 |
0.73 |
| LG4 |
240 |
129 |
143 |
159 |
91 |
96 |
80.8 |
72.4 |
54.3 |
1.33 |
0.34 |
0.56 |
0.38 |
0.51 |
0.80 |
0.57 |
| LG5 |
250 |
126 |
123 |
166 |
77 |
84 |
72.4 |
52.3 |
58.0 |
0.90 |
0.29 |
0.42 |
0.47 |
0.44 |
0.68 |
0.69 |
| LG6 |
123 |
99 |
119 |
68 |
69 |
87 |
72.2 |
52.8 |
57.2 |
0.92 |
0.59 |
0.53 |
0.48 |
1.06 |
0.77 |
0.66 |
| LG7 |
186 |
102 |
106 |
125 |
85 |
81 |
59.5 |
62.1 |
56.7 |
1.10 |
0.32 |
0.61 |
0.53 |
0.48 |
0.73 |
0.70 |
| LG8 |
223 |
129 |
156 |
99 |
101 |
89 |
63.3 |
58.6 |
53.1 |
1.10 |
0.28 |
0.45 |
0.34 |
0.64 |
0.58 |
0.60 |
| LG9 |
166 |
142 |
134 |
115 |
91 |
98 |
65.2 |
62.2 |
60.2 |
1.03 |
0.39 |
0.44 |
0.45 |
0.57 |
0.68 |
0.61 |
| LG10 |
183 |
93 |
136 |
130 |
74 |
91 |
59.1 |
64.1 |
49.0 |
1.31 |
0.32 |
0.69 |
0.36 |
0.45 |
0.87 |
0.54 |
| LG11 |
234 |
94 |
135 |
168 |
75 |
90 |
78.6 |
53.6 |
59.4 |
0.90 |
0.34 |
0.57 |
0.44 |
0.47 |
0.71 |
0.66 |
| LG12 |
247 |
76 |
135 |
109 |
54 |
80 |
49.5 |
58.4 |
46.2 |
1.26 |
0.20 |
0.77 |
0.34 |
0.45 |
1.08 |
0.58 |
| LG13 |
208 |
131 |
152 |
112 |
88 |
86 |
59.2 |
55.5 |
57.8 |
0.96 |
0.28 |
0.42 |
0.38 |
0.53 |
0.63 |
0.67 |
| LG14 |
115 |
109 |
107 |
75 |
90 |
74 |
67.7 |
55.6 |
49.8 |
1.12 |
0.59 |
0.51 |
0.47 |
0.90 |
0.62 |
0.67 |
| LG15 |
203 |
110 |
126 |
131 |
97 |
78 |
43.8 |
55.1 |
52.0 |
1.06 |
0.22 |
0.50 |
0.41 |
0.33 |
0.57 |
0.67 |
| LG16 |
165 |
111 |
105 |
94 |
90 |
81 |
80.2 |
59.1 |
65.3 |
0.91 |
0.49 |
0.53 |
0.62 |
0.85 |
0.66 |
0.81 |
| LG17 |
144 |
101 |
137 |
88 |
90 |
84 |
76.3 |
58.0 |
61.4 |
0.94 |
0.53 |
0.57 |
0.45 |
0.87 |
0.64 |
0.73 |
| LG18 |
193 |
125 |
107 |
144 |
117 |
75 |
77.7 |
65.4 |
53.5 |
1.22 |
0.40 |
0.52 |
0.50 |
0.54 |
0.56 |
0.71 |
| LG19 |
156 |
57 |
116 |
72 |
37 |
84 |
67.2 |
45.3 |
63.4 |
0.71 |
0.43 |
0.79 |
0.55 |
0.93 |
1.22 |
0.75 |
| LG20 |
199 |
75 |
80 |
134 |
61 |
60 |
54.3 |
51.7 |
48.5 |
1.07 |
0.27 |
0.69 |
0.61 |
0.41 |
0.85 |
0.81 |
| LG21 |
143 |
131 |
146 |
109 |
88 |
108 |
71.0 |
55.5 |
53.0 |
1.05 |
0.50 |
0.42 |
0.36 |
0.65 |
0.63 |
0.49 |
| LG22 |
249 |
130 |
91 |
150 |
85 |
67 |
61.1 |
50.5 |
56.6 |
0.89 |
0.25 |
0.39 |
0.62 |
0.41 |
0.59 |
0.84 |
| LG23 |
221 |
75 |
115 |
156 |
60 |
79 |
61.9 |
53.5 |
53.9 |
0.99 |
0.28 |
0.71 |
0.47 |
0.40 |
0.89 |
0.68 |
| LG24 |
235 |
109 |
124 |
113 |
88 |
85 |
67.6 |
58.4 |
59.1 |
0.99 |
0.29 |
0.54 |
0.48 |
0.60 |
0.66 |
0.70 |
| Total | 4608 | 2516 | 2939 | 2849 | 1902 | 2005 | 1581.7 | 1370.9 | 1335.5 | 1.03 | 0.34 | 0.54 | 0.45 | 0.56 | 0.72 | 0.67 |