Table 2.
Number of reads (Millions) that were categorized from reference mapping RNA-seq reads
| Accessions | A- Reads | D- Reads | X Reads | N Reads | Mapped total | Mapped% |
|---|---|---|---|---|---|---|
|
G. arboreum |
16.5 |
0.1 |
0 |
14 |
30.8 |
73.30% |
|
G. raimondii |
0 |
17.1 |
0 |
16.5 |
33.9 |
84.70% |
| Diploid F1-Hybrid |
8 |
8.4 |
0.1 |
15.1 |
32 |
78.80% |
|
G. hirsutum Maxxa |
7 |
6.7 |
1.2 |
13.5 |
28.6 |
77.70% |
|
G. hirsutum Tx2094 |
8 |
7.7 |
1.4 |
15.7 |
33.1 |
76.60% |
|
G. tomentosum |
7.3 |
6.9 |
1.3 |
14.2 |
29.8 |
77.60% |
| Total | 46.8 | 46.9 | 4.1 | 88.9 | 188.2 | 78.10% |
A- and D-reads were categorized as belonging to the A- and D-genomes. X-reads exhibited a mixed signal, with evidence for both genomes. N-reads did not overlap a known homoeo-SNP and could not be categorized.