Table 3.
Genes altered in their coding sequences by homozygous structural variants in ‘Sultanina’ genome
| Variant type | Deletions | Insertions | Number of genes |
|---|---|---|---|
| Codon-change codon |
127 |
128 |
250 |
| Codon |
243 |
267 |
489 |
| Exon deleted |
45 |
- |
45 |
| Frame shift |
709 |
797 |
1,285 |
| Splice site acceptor |
89 |
33 |
121 |
| Splice site donor |
81 |
27 |
107 |
| Start lost |
5 |
- |
5 |
| Stop gained |
- |
62 |
60 |
| Stop lost | 9 | - | 9 |
Variant types produced by deletions or insertions were classified according to their effect in the coding region. The total number of genes affected by INDELs is shown in the third column. As it can be seen, some genes contain more than one event.