Skip to main content
. 2014 Jan 10;14:17. doi: 10.1186/1471-2229-14-17

Table 4.

Genetic diversity of flowering genes in Morocco and Iberia

Gene Sequence length 1 Genetic group 2 Number of populations Number of polymorphisms 3 N H 3 H S 3 R S 3 R P 3 π silent Haplogrups or truncations 4 Haplogrup frequency (%) 4
FRI
3470
M
20
24
16
0.049±0.011
1.18±0.03
0.092±0.022
0.0023
Yes
5
 
 
IP
178
87
97
0.058±0.009
1.24±0.03
0.181±0.023
0.0023
Yes
12.2
 
 
IP-1
111
69
54
0.059±0.009
1.24±0.03
0.079±0.011
0.0023
Yes
17.9
 
 
IP-2
29
26
14
0.029±0.007
1.13±0.02
0.028±0.010
0.0010
Yes
6.5
 
 
IP-3
24
35
22
0.055±0.011
1.21±0.03
0.098±0.018
0.0026
No
0
 
 
IP-4
14
19
7
0.046±0.011
1.15±0.03
0.032±0.014
0.0019
No
0
FLC
451
M
20
4
5
0.126±0.058
1.31±0.13
0.314±0.135
0.0033
A
100
 
 
IP
181
8
18
0.104±0.035
1.38±0.11
0.378±0.106
0.0039
A
100
 
 
IP-1
112
7
8
0.081±0.032
1.31±0.11
0.144±0.092
0.0032
A
100
 
 
IP-2
31
3
3
0.073±0.040
1.22±0.12
0.064±0.041
0.0022
A
100
 
 
IP-3
24
4
4
0.047±0.028
1.19±0.09
0.083±0.072
0.0025
A
100
 
 
IP-4
14
2
3
0.049±0.039
1.14±0.10
0.106±0.078
0.0027
A
100
CRY2
1529
M
20
8
6
0.104±0.036
1.29±0.09
0.210±0.078
0.0229
A, B
B=5
 
 
IP
181
19
24
0.054±0.023
1.20±0.06
0.139±0.047
0.0145
A, B
B=9.9
 
 
IP-1
112
10
8
0.037±0.021
1.13±0.05
0.029±0.011
0.0075
A, B
B=3.6
 
 
IP-2
31
5
5
0.033±0.022
1.10±0.05
0.031±0.021
0.0052
A, B
B=3.2
 
 
IP-3
24
7
8
0.052±0.024
1.18±0.07
0.162±0.064
0.0023
A
100
 
 
IP-4
14
4
3
0.052±0.025
1.16±0.08
0.051±0.044
0.0229
A, B
B=85.7
PHYC
868
M
19
6
7
0.065±0.033
1.24±0.11
0.121±0.059
0.0168
Ler, Col
Col=5
 
 
IP
160
18
34
0.062±0.024
1.23±0.06
0.141±0.036
0.0106
Ler, Col
Col=7.4
 
 
IP-1
102
13
15
0.061±0.024
1.23±0.06
0.090±0.032
0.0092
Ler, Col
Col=6.9
 
 
IP-2
30
3
4
0.026±0.018
1.09±0.05
0.032±0.029
0.0039
Ler
100
 
 
IP-3
16
8
9
0.070±0.028
1.25±0.08
0.100±0.045
0.0158
Ler, Col
Col=16.7
    IP-4 12 5 6 0.062±0.028 1.20±0.11 0.035±0.024 0.0148 Ler, Col Col=14.3

For each gene, the following parameters are shown for Morocco, the Iberian Peninsula and the four Iberian genetic groups: number of polymorphisms, number of haplotypes (N H ), gene diversity (H S ), allelic richness (R S ), private allelic richness (R P ), silent nucleotide diversity (π silent ), and the type and frequency of major haplogroups or functional alleles. H S , R S and R P are mean values ± SE.

1: Alignment length of all sequences.

2: Genetic groups correspond to the four main Iberian groups detected with STRUCTURE; IP: Iberian Peninsula; M: Morocco.

3: Only polymorphisms that are not in complete LD are included.

4: Accessions are classified as functional and loss-of-function truncations for FRI[30] or as the two major functional haplogroups described for FLC, CRY2 and PHYC[54-56]. Frequencies are given for truncations and for the minor frequency haplogroups.