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. Author manuscript; available in PMC: 2014 Nov 15.
Published in final edited form as: J Immunol. 2013 Oct 11;191(10):5074–5084. doi: 10.4049/jimmunol.1300407

TABLE 2.

Cathepsin Stability of selected p1 substitutions compared to the reference peptide AcVRFFKNI.

Compound PV- Sequence Cathepsin/Cathepsin conc. (U/μmol compd) pH T1/2 (min) [Estimate] Cleavage site (s)
004 Ac-VRFFKNI-NH2 B 0.30 5.5 4.6 Ac-VRF-//-FKNI-NH2
004 Ac-VRFFKNI-NH2 L 0.15 5.5 4.4 Ac-VRFF-//-KNI-NH2
004 Ac-VRFFKNI-NH2 S 0.30 5.5 21 Ac-VR-//-FF-//-K-//-NI-NH2
267 Ac-V-Chg-R-Tic-F-NH2 B 0.30 5.5 > 4 h [7 h] Ac-V-Chg-R-Tic-F-//-NH2
267 Ac-V-Chg-R-Tic-F-NH2 S 0.30 5.5 > 4 h [7h] Ac-V-Chg-R-Tic-F-//-NH2
267 Ac-V-Chg-R-Tic-F-NH2 S 0.15 5.5 20 h ND
267 Ac-V-Chg-R-Tic-F-NH2 L 0.01 5.5 24 h Ac-V-Chg//-R-Tic-F-NH2

Test compound and cathepsin solutions were prepared as described in Materials and Methods. Cathepsin enzymes at indicated concentrations were added to the compound solution and incubated for 4, 8, 16, 32, 64, 128, 256 min and 24 hr for analysis. Chg, cyclohexylglycine, Tic, tetrahydroisoquinolin-3-carboxylic acid, ND, no cleavage detected, all are tested as C-terminal amides.