Table 1. Summary of the main characteristics of GIMME [8], MBA [10], iMAT [35], mCADRE [26], INIT [13], and fastcore (this paper) reconstruction algorithms.
GIMME | MBA | iMAT | mCADRE | INIT | FASTCORE | |
Optimization | LP | MILP | MILP | MILP | MILP | LP |
Computational cost | low | high | high | high | high | low |
Function required | yes | no | no | yes | yes | no |
Omics required | yes | optional | yes | yes | yes | no |
Code available | yes | yes | yes | yes | no | yes |