Table 1. Mutation and recombination diversity give two different estimates of effective population size of the Çukurova population.

Chromosome	Length (Kb)	# variable sites included	Θ per Kb	Posterior median ρ	95% HPD CI for ρ	Ne(θ)	Ne(ρ)	Ratio Neρ/Neθ
1	269	138	0.089	0.000745	(0.000438,0.001121)	1.82×105	3.73	4.88×104
2	336	121	0.039	0.000316	(0.000222,0.000440)	7.99×104	1.55	5.16×104
3	384	83	0.029	0.000524	(0.000151,0.001514)	5.94×104	3.71	1.60×104
4	473	17	0.021	0.000531	(0.000152,0.001063)	4.30×104	2.85	1.51×104
10	571	515	0.066	0.000343	(0.000209,0.000513)	1.35×105	1.71	7.90×104
11	583	565	0.066	0.000373	(0.000229,0.000556)	1.35×105	1.87	7.23×104
12	675	666	0.057	0.000387	(0.000234,0.000557)	1.17×105	1.93	6.05×104
14	623	525	0.067	0.000188	(0.000112,0.000369)	1.35×105	1.01	1.36×105
15	630	375	0.05	0.000154	(0.000066,0.000368)	1.02×105	0.86	1.19×105
16	715	537	0.059	0.000206	(0.000120,0.000367)	1.21×105	1.03	1.17×105
17	685	292	0.032	0.000270	(0.000124,0.000501)	6.55×104	1.42	4.62×104
19	702	630	0.053	0.000142	(0.000094,0.000197)	1.09×105	0.70	1.55×105
21	773	738	0.115	0.000264	(0.000196,0.000344)	2.36×105	1.30	1.82×105
27	1,130	921	0.075	0.000240	(0.000170,0.000330)	1.54×105	1.19	1.29×105

Estimates of mutation and recombination diversity per chromosome, effective population size estimates, and the estimated ratio of meiosis to mitosis in the CUK population. Entries are for those chromosomes that show stable disomy across our sample collection, and for which PHASE estimates of the recombination parameter ρ converged in at least four out of five MCMC estimates.