Table 3. Transcription and translation coordinates, and function of primary ORFs without determined time of expression.

Gene	Str	TSS-PolyA	Start-Stop	Ann	Variant	Timing	Function	Ref
ORF2	−	N/A	18534–17902	P		N/A	dihydrofolate reductase	[137], [138]
ORF7	+	N/A	6609–8696	M		N/A	virion protein	[136]
ORF48	−	N/A	71197–69989	P		N/A	N/A
ORF49	−	N/A-71432	72354–71446	P		N/A	Activates JNK/p38	[139]
ORF63	+	N/A	101027–103813	P		N/A	NLR homolog	[140]
ORF64	+	N/A	103819–111726	P		N/A	Deubiquitinase	[139]
ORFK15	−	N/A	N/A	N/A	Internal	N/A	LMP1/2	[141]

Timing of expression could not be determined for these genes due to overlapping transcripts or low sequencing coverage. Str: Strand; TSS: transcription start site; N/A, not determined in silico or by manual annotation; Ann: Annotation; P: predicted; M: manual annotation; Internal: ORF with internal ORFs.