Table 2.
Development of coexpression data performance
| Species | Version | No. of genes | No. of samplesb | GO scorec | Codon scored | ||
|---|---|---|---|---|---|---|---|
| Arabidopsis | Ath.c5-0 | 20,836 | 11,171 | 7.27 | 4.02 | ||
| Arabidopsisa | Ath.c4-1 | 20,906 | 1388 | 5.97 | 2.48 | ||
| Arabidopsis | Ath2.c1-0 | 25,838 | 328 | 4.88 | 2.63 | ||
| Soybean | Gma.c1-0 | 15,902 | 938 | 2.53 | |||
| Poplar | Ppo.c1-0 | 21,909 | 404 | 1.77 | |||
| Grape | Vvi.c1-0 | 8,351 | 245 | 1.42 | |||
| Alfalfa | Mtr.c1-0 | 4,166 | 585 | 1.37 | |||
| Rice | Osa.c3-0 | 20,625 | 1214 | 3.73 | 2.38 | ||
| Ricea | Osa.c2-0 | 20,125 | 310 | 3.63 | 2.18 | ||
| Maize | Zma.c1-0 | 8,397 | 617 | 1.96 | |||
| Random | 0.5 | 1.00 | |||||
a Italicized lines indicate previous versions of Arabidopsis and rice coexpression data.
b This column indicates the number of slides for each microarray platform and the number of runs for the RNAseq platform (Ath2).
c Predictive performance of the GO annotation represented by AUC0.01 (E–4). A larger score indicates a better performance.
d Coincidence score with codon similarity represented by the median of the normalized COXSIM value. A larger score indicates a better performance.